Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g01217 ATGGAAGAAGAAGGGCTTGCCATGCTCATCACTCACCTTCACCATTTCTCTCACTCTCTTTCTCCTCCTTTTACCCTTCAACCTCACCACCCTCTACTCTCTCAACAACTCCCCAGATTGTCCTTCTTTGACATTGATGATTACTCCGTAGATGACTTCTGTGGCCTTGTAATGGCAGCTGGAAAGTCTGGAAGTTTCAGGATGATGGAGCCTCTAAAGCATCCATCTAAGAAGTCTCGAAGAGATAGGAGCCGTGGAAAATCATCTGGAAGGTCCTCCAGGGATGAGGCTATGGAACAACAAATTTGGAAAAATTTGCCCGAGGATCTATTTGAGCCTGTGATTGCACGACTTCCCGTTGCCACATTTTTCCGCTTCCGCTCCGTATGCCAGCGATGGAATTCCTTGTTGACTTCTCAAAGTTTTTCTAGGCATTGTGCTCAAGTCCCACAAGCAAACCCATGGTTTTACACTGTAACTCATGAACACGCAAATTCTGTGGCCATGTATGATCCTTCTATGAAGAAGTGGTACCATCCCACTACATCAACACTGCCCTCAGAATTTATAGTTTTACCAGTGGCTTCTGCAGGGGGTCTGGTTTGCATTCTTGACGTTTATCGTCAAAATTTCTATGTTTGTAACCCATTGACTCAATCCTTAAAGGAGTTACCAGCTCGGTCAGGTAGGGTTGGGTTTCGTGTTGCTGTAGGAATGACAGTAAATGGAAACTCAGCTGGTACTGGCTACCAGATCCTATTGGTGGGTTGTGATGGAGAATATGAAATTTATGACTCAGTAACAAATTCTTGGAGCCATCCAGAAAACATGCCTGCAGATATTAAGCTGCCGCTGTCACTCAATTTTAGGTCACATGCTGTTTCTATTGACAGCACCCTGTACTTCATGCATTCAGATCCCGAAGGGATTGTTTCCTATGATATGGCAACTGGGGTTTGGACACAGTACATAATCCCAGCGCCATTGCATCTGACTGACCACATGCTGGCTGAGTGTGATGGCCGGATATTGCTTGTGGGGTTGCTCACGAAGAATGCAGCCACGTGTATATGCATATGGGAGCTGCAGAAGATGACGTTCTTGTGGAAGGAGGTTGACAGAATGCCAAACGTATGGTGCTTGGACTTTTATGGGAAGCACGTTCGAATGACTTGCTTGGGAAACAAAGGCTTGCTCATGTTATCCTTGAGATCGAGACAAATGAATCGATTGGTTACTTACAACATAGCAAGTAGGGAGTGGGTGAAGGTTCCTGGGTGTCTGGTGCCACATGGAAGAAAACGGCATTGGATAGCATATGGTACTGCATTTTATCCATGCCTCACTGCAATGGCTTGA 1359 0.4562 MEEEGLAMLITHLHHFSHSLSPPFTLQPHHPLLSQQLPRLSFFDIDDYSVDDFCGLVMAAGKSGSFRMMEPLKHPSKKSRRDRSRGKSSGRSSRDEAMEQQIWKNLPEDLFEPVIARLPVATFFRFRSVCQRWNSLLTSQSFSRHCAQVPQANPWFYTVTHEHANSVAMYDPSMKKWYHPTTSTLPSEFIVLPVASAGGLVCILDVYRQNFYVCNPLTQSLKELPARSGRVGFRVAVGMTVNGNSAGTGYQILLVGCDGEYEIYDSVTNSWSHPENMPADIKLPLSLNFRSHAVSIDSTLYFMHSDPEGIVSYDMATGVWTQYIIPAPLHLTDHMLAECDGRILLVGLLTKNAATCICIWELQKMTFLWKEVDRMPNVWCLDFYGKHVRMTCLGNKGLLMLSLRSRQMNRLVTYNIASREWVKVPGCLVPHGRKRHWIAYGTAFYPCLTAMA 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g01217 452 Gene3D - 103 142 - -
Pumo6g01217 452 SMART fbox_2 106 146 IPR001810 GO:0005515
Pumo6g01217 452 ProSiteProfiles F-box domain profile. 100 145 IPR001810 GO:0005515
Pumo6g01217 452 FunFam F-box only protein 6 153 439 - -
Pumo6g01217 452 SUPERFAMILY Galactose oxidase, central domain 127 441 IPR011043 -
Pumo6g01217 452 PANTHER BNACNNG10540D PROTEIN 75 428 - -
Pumo6g01217 452 CDD F-box_AtFBW1-like 105 142 - -
Pumo6g01217 452 FunFam F-box only protein 6 103 142 - -
Pumo6g01217 452 Gene3D - 156 439 IPR015915 GO:0005515
Pumo6g01217 452 MobiDBLite consensus disorder prediction 68 98 - -
Pumo6g01217 452 Pfam F-box domain 103 142 IPR001810 GO:0005515
Pumo6g01217 452 SUPERFAMILY F-box domain 91 158 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g01217 Pumo-Chr6 16111151 16114186 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g01217 - - gmx:100775721 822.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g01217 6 16111151 16114186 Pumo6g01217 6 16111151 16114186 ECH
Pumo1g00465 1 6300408 6305494 Pumo6g01217 6 16111151 16114186 PCT