Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00465 ATGGAAGGGCTGGCCATGCTGAAGCAGCTCATTGGTCAGCTTCAGCACCTCTTGGACACTTACCATTCTCAATCTTCTTCTCTCATTCTCCAACCTTCTCATCACACTCACACTCTCCTCTTTCAACAACAACAACAACAACACCCCAGATGGACCTCCCTTGACATTGAAGATAGCTCTGTAGATGACTTCTGTGGGCTTGTAATGACAGCTAGAAAGTCTGGCAGTTTCAGAATGTCAGAGCCTGTAAAGCCTCCACCTACTAAGAAGTCTCGAAGAGATAGAAGCAGGGGCAAATCATCCGGAAGATCTTGTACAACTGAAGTTATGGAACAAGAAATTTGGAAAGATTTTCCTGAAGATTTATTTGAGGCTGTGATTGCACGACTTCCCATTGCCACATTTTTCCGCTTCCGCTCTGTCTGCCGGCAGTGGAATTCCATGCTGACTTCTCAAAGTTTTTCTCAGCATTGTACTCAAGTCACACAAGAAAATCCATGGTTTTACACCATTACCCATGAAAATGTGAATTCGGGAGCCATGTACGACCCTTCTTTGAAAAAATGGCATCACCCAACTATATCAACACCGCCCACAAAATTGATTGTTTTACCTGTGGCTTCTGCTGGCGGTTTAGTTTGCTTTCTTGACATTGGTCATCGAAACTTCTTTGTTTGTAACCCACTGACTCAATCCTTCAAGGAGTTGCCAGCTCGATCAGTTAAGGTCTGGTCTCGTGTTGCTGTAGGGATGACAACAAATGGAAACTCTGCTGGTTCAGGCTACAAGATCTTATGGGTGGGTTGTGATGGAGAATATGAAGTATATGATTCAGTCAGAAATTCTTGGAGTCGTCCAGGAAACATGCCTGCAGGTATGAAGCTGCCATTGTCGCTCAACTTTAGGTCTCAGGCTGTCTCTATTGGCAGCACGCTTTACTTCATGCGTTCAGACCCAGAAGGGATTGTTTCCTATGATATGGCAACTGGGATTTGGAAACAATATATAATCCCAGCGCCATTGCATCTGACTGATCACACTCTGGCTGAGTGTGATGGCCAGATCCTGCTTGTGGGTTTGCTCACGAAGAATGCAGCTACTTGTGTATGCATATGGGAGCTGCAGAAAATGACTCTCTTGTGGAAGGAGGTTGACAGAATGCCAAACATATGGTGCTTGGACTTTTATGGGAAGCACGTTAGAATGACTTGCCTGGGGAACAAAGGCTTGCTCATGTTGTCCTTGAGATCAAAACAAATGAACCGATTGGTTACTTACAACATAGCAAAGAAAGAATGGCTGAAGGTTCCTGGGTGTGTGGTGCCACGTGGGAGAAAACGACAGTGGATAGCATGTGGTACTGCATTTCATCCATGCCTGACTGCGGTGGCATGA 1395 0.4523 MEGLAMLKQLIGQLQHLLDTYHSQSSSLILQPSHHTHTLLFQQQQQQHPRWTSLDIEDSSVDDFCGLVMTARKSGSFRMSEPVKPPPTKKSRRDRSRGKSSGRSCTTEVMEQEIWKDFPEDLFEAVIARLPIATFFRFRSVCRQWNSMLTSQSFSQHCTQVTQENPWFYTITHENVNSGAMYDPSLKKWHHPTISTPPTKLIVLPVASAGGLVCFLDIGHRNFFVCNPLTQSFKELPARSVKVWSRVAVGMTTNGNSAGSGYKILWVGCDGEYEVYDSVRNSWSRPGNMPAGMKLPLSLNFRSQAVSIGSTLYFMRSDPEGIVSYDMATGIWKQYIIPAPLHLTDHTLAECDGQILLVGLLTKNAATCVCIWELQKMTLLWKEVDRMPNIWCLDFYGKHVRMTCLGNKGLLMLSLRSKQMNRLVTYNIAKKEWLKVPGCVVPRGRKRQWIACGTAFHPCLTAVA 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00465 464 FunFam F-box only protein 6 165 451 - -
Pumo1g00465 464 ProSiteProfiles F-box domain profile. 112 157 IPR001810 GO:0005515
Pumo1g00465 464 SUPERFAMILY F-box domain 110 189 IPR036047 GO:0005515
Pumo1g00465 464 Pfam F-box domain 115 154 IPR001810 GO:0005515
Pumo1g00465 464 SMART fbox_2 118 158 IPR001810 GO:0005515
Pumo1g00465 464 FunFam F-box only protein 6 115 154 - -
Pumo1g00465 464 SUPERFAMILY Galactose oxidase, central domain 154 445 IPR011043 -
Pumo1g00465 464 PANTHER BNACNNG10540D PROTEIN 91 458 - -
Pumo1g00465 464 CDD F-box_AtFBW1-like 117 154 - -
Pumo1g00465 464 Gene3D - 115 154 - -
Pumo1g00465 464 Gene3D - 168 451 IPR015915 GO:0005515
Pumo1g00465 464 MobiDBLite consensus disorder prediction 76 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00465 Pumo-Chr1 6300408 6305494 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00465 - - gmx:100810179 883.634
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo1g00465 1 6300408 6305494 Pumo6g01217 6 16111151 16114186 PCT