Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00888 ATGTTACAGAGGAGAAAGGGTGCCATTGTTAACATTGGATCAGGTGCTGCTGTGGTTGTGCCTTCTCATCCTCTCTTTACAATCTATGCTGCTACAAAGGCTTACGTTGATCAGTTATCAAGATCTCTGTACGTGGAGTATGGACATTACGGGATTCATGTGCAATGTCAGGTAGTACCACTGTACGTTGCAACGAATATGGTATCAAGGGTGGCATCTATTGAGAGAGATTCATTGTTCGTACCAACAGCTGAGGCTTATGCAAGAGCTGCAATTGGTGAAATTGGGTACAAACCAAGGTGCACACCTTACTGGGCTCACTCTATTCAGTGGTATTTCGCAAACTTAATCCCTGACCCACTACTTGATACTTGGCGCTTCTCCATTGGTATGCGCCGCAGGAATCAAAAGGGGGAGTGA 420 0.4548 MLQRRKGAIVNIGSGAAVVVPSHPLFTIYAATKAYVDQLSRSLYVEYGHYGIHVQCQVVPLYVATNMVSRVASIERDSLFVPTAEAYARAAIGEIGYKPRCTPYWAHSIQWYFANLIPDPLLDTWRFSIGMRRRNQKGE 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00888 139 PRINTS Glucose/ribitol dehydrogenase family signature 1 14 IPR002347 -
Pumo6g00888 139 PRINTS Glucose/ribitol dehydrogenase family signature 29 48 IPR002347 -
Pumo6g00888 139 Pfam short chain dehydrogenase 1 71 IPR002347 -
Pumo6g00888 139 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 129 IPR036291 -
Pumo6g00888 139 Gene3D - 1 125 - -
Pumo6g00888 139 PANTHER RH59310P 1 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00888 Pumo-Chr6 11037054 11039708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00888 1 135 Lipid Metabolism Gene Families AT1G24470 68.889 8.52e-66 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00888 K10251 - qsu:112015935 210.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00888 6 11037054 11039708 Pumo6g00888 6 11037054 11039708 ECH
Pumo6g00888 6 11037054 11039708 Pumo1g00409 1 5788428 5791423 PCT