Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00409 ATGGAATGCTGTATAATCGCCAGGCTCAAGTCCCAACCCCTATGGTTCACACTGCTCTTCGTTGTGGGGTTGTTAACTATTCTGAAACTGGCTTTGGTTGTTCTCAGATGGGTCTACGTCAATTTCCTCAGACCACCGAAGAATCTCAAAAAGTACGGATCTTGGGCTGTGGTTACCGGACCCACTGACGGCATTGGAAAGAGCTTCGCTTTCGAGCTGGCTCGCAAGGGTCTGAACCTCGTCCTGGTCGGGCGGAACCCCGACAAGCTGAAAGACGTGTCGGATTGGATCGTGGCAAAGTTCGGAAAAACCGAGATTAAGACTGTCGTGGTTGATTTCTCGGGGGATCTGGACGAGGGTGTGGCGAAGATTGGCGCTGCAATTGAAGGGTTGGACATTGGAGTGCTCGTTAACAATGTGGGAGTTTCGTACCCTTACGCGAGGTTCTTCCATGAAGTGGACGAGGGGCTTCTCAACAACCTTATTAAGGTTAACGTTGTTGGAACTACTAAGGTCACGCAAGCTGTTCTGCCCGGGATGCTCAAGAGAAAGAAGGGGGCGATTGTTAACATTGGTTCTGGAGCTGCAATTGTCATTCCTTCGGATCCCCTTTATGCTGTTTATGCCGCCACCAAAGCGTACGTCGATCAGTTTTCCAGATGTCTCTATGTTGAATACAAGAAGAGTGGGATTGACGTTCAGTGTCAGGTTCCATTATATGTGGCAACTAAGATGGCATCAATCAGGAAATCTTCATTCTTTGTTCCATCAACAGATGGCTATGCCAAAGCCGGCATGCGATGGATAGGCTACGAGCCTCGTTGCACGCCATACTGGCCACACACTCTTCTTTGGGCCGTGGCATGCTCATTGCCTGAGTTTGTTGTTGATGCTTGGCGCCTGTGGTTTTGCTTGGGTATTCGAAAGAGGGGACAGCGCAAAGAGTCCATGAAGAAGGAATAA 963 0.4953 MECCIIARLKSQPLWFTLLFVVGLLTILKLALVVLRWVYVNFLRPPKNLKKYGSWAVVTGPTDGIGKSFAFELARKGLNLVLVGRNPDKLKDVSDWIVAKFGKTEIKTVVVDFSGDLDEGVAKIGAAIEGLDIGVLVNNVGVSYPYARFFHEVDEGLLNNLIKVNVVGTTKVTQAVLPGMLKRKKGAIVNIGSGAAIVIPSDPLYAVYAATKAYVDQFSRCLYVEYKKSGIDVQCQVPLYVATKMASIRKSSFFVPSTDGYAKAGMRWIGYEPRCTPYWPHTLLWAVACSLPEFVVDAWRLWFCLGIRKRGQRKESMKKE 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00409 320 PIRSF 11-beta-HSD1 4 314 - -
Pumo1g00409 320 Pfam short chain dehydrogenase 55 247 IPR002347 -
Pumo1g00409 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 53 271 IPR036291 -
Pumo1g00409 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 131 142 IPR002347 -
Pumo1g00409 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 186 194 IPR002347 -
Pumo1g00409 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 208 227 IPR002347 -
Pumo1g00409 320 Gene3D - 49 266 - -
Pumo1g00409 320 CDD 17beta-HSD1_like_SDR_c 53 295 - -
Pumo1g00409 320 FunFam very-long-chain 3-oxoacyl-CoA reductase 1 49 277 - -
Pumo1g00409 320 PANTHER RH59310P 14 319 - -
Pumo1g00409 320 PRINTS Glucose/ribitol dehydrogenase family signature 180 196 IPR002347 -
Pumo1g00409 320 PRINTS Glucose/ribitol dehydrogenase family signature 55 72 IPR002347 -
Pumo1g00409 320 PRINTS Glucose/ribitol dehydrogenase family signature 131 142 IPR002347 -
Pumo1g00409 320 PRINTS Glucose/ribitol dehydrogenase family signature 208 227 IPR002347 -
Pumo1g00409 320 PRINTS Glucose/ribitol dehydrogenase family signature 229 246 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00409 Pumo-Chr1 5788428 5791423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00409 1 320 Lipid Metabolism Gene Families AT1G67730 66.250 3.61e-166 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00409 K10251 - gmx:100814139 606.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00888 6 11037054 11039708 Pumo1g00409 1 5788428 5791423 PCT