Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00873 ATGCTTCTAGAGCTAGAGACTTGGACAGCTTTGGTTGTTTTGTTTTTGCTTGTGTTGATTCTAAAGGAGTCGATCATGGGAGGTAAGAGTTCAAAAGGGTCTGATAGAAGGCATGTTTCATCGCATGGATCTGCTGGTTCTTCATCTTCATGGGATAACTTTGGATACCCTCAATCACCACATGCATACCCACAACAAAATCCATATCATACGCCTCTTCACCACCGTGCACCAGCTCCGGCTCCATTCCACGACTATTCACAGCCAAAAAGGAAATTGGATAGGAGATATTCAAGAATAGCTGATGATTACCATTCACTGGATGAGGTTACCACTGCTCTTTCCCATGCTGGCCTGGAATCTTCTAATCTCATTGTTGGCATTGATTTTACAAAGAGCAACGAGTGGACAGGGAAGAGGTCATTCAACCGAAAAAGTTTACATCATATAGGAAGTGGTCATAATCCTTATGAACAAGCAATCTCGATTATTGGAAAAACTTTAAGTGCTTTTGACGAGGATAACTTGATTCCTTGTTTTGGATTTGGAGATGCATCAACGCATGATCAAGATGTCTTTAGTTTCCATTCAGATGAGAGGTTCTGCAATGGATTTGAGGAAGTTCTGTCACGATATAGAGATATTGTTCCTCGCCTGCGTCTAGCAGGACCCACTTCATTTGCCCCTATTATTGAGATGGCCATGACTATAGTTGAGCAAAGTGGCGGCCAATATCATGTGTTGCTAATAATTGCTGATGGACAGGTGACCAGAAGCGTTGACACACAACATGGACAGCTAAGTCCTCAGGAACAGAAGACAATTGATGCGATTGTAAAAGCCAGTGAGTATCCACTTTCAATAGTTTTGGTGGGGGTTGGAGACGGACCGTGGGATATGATGAGGGAATTTGATGATAACATTCCAGCTCGAGCATTTGACAATTTTCAGTTTGTGAATTTTACCGAAATAATGTCAAAGAGTATAGACTCAAGCAGAAAAGAGACAGAGTTTGCTCTATCAGCTTTGATGGAGATACCTTCTCAATATAAGGCAACCATAGATCATGGCATATTGGGTGCACGGAGAGGACATTCACCAGACAGGGTTCCTCTACCTCCACCTCATTATGAGAGGGCTTCTAGCAGCAGCACAACATCTTTGCGTTCAAACAGTTTTCAGCAGAGCACACCTACATATTCTGGCTATGATAATAATGTTAACGCAGAATCATCTTCAAGAAGCTTATATGATAACAAGGTTTGCCCGATTTGTCTTACTAATGGGAAGGATATGGCCTTTGGTTGCGGGCACCAGACTTGTTGTGACTGTGGAGAAAACCTCGAATTCTGCCCCATTTGCCGAAGCACAATCACTACGAGAATAAAGCTTTACTAG 1398 0.4249 MLLELETWTALVVLFLLVLILKESIMGGKSSKGSDRRHVSSHGSAGSSSSWDNFGYPQSPHAYPQQNPYHTPLHHRAPAPAPFHDYSQPKRKLDRRYSRIADDYHSLDEVTTALSHAGLESSNLIVGIDFTKSNEWTGKRSFNRKSLHHIGSGHNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFHSDERFCNGFEEVLSRYRDIVPRLRLAGPTSFAPIIEMAMTIVEQSGGQYHVLLIIADGQVTRSVDTQHGQLSPQEQKTIDAIVKASEYPLSIVLVGVGDGPWDMMREFDDNIPARAFDNFQFVNFTEIMSKSIDSSRKETEFALSALMEIPSQYKATIDHGILGARRGHSPDRVPLPPPHYERASSSSTTSLRSNSFQQSTPTYSGYDNNVNAESSSRSLYDNKVCPICLTNGKDMAFGCGHQTCCDCGENLEFCPICRSTITTRIKLY 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00873 465 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 400 465 IPR013083 -
Pumo6g00873 465 PANTHER COPINE FAMILY PROTEIN 1 38 442 - -
Pumo6g00873 465 MobiDBLite consensus disorder prediction 362 405 - -
Pumo6g00873 465 MobiDBLite consensus disorder prediction 378 405 - -
Pumo6g00873 465 Pfam Copine 146 359 IPR010734 -
Pumo6g00873 465 ProSiteProfiles Zinc finger RING-type profile. 422 455 IPR001841 -
Pumo6g00873 465 MobiDBLite consensus disorder prediction 40 66 - -
Pumo6g00873 465 Pfam Zinc finger, C3HC4 type (RING finger) 419 460 - -
Pumo6g00873 465 SUPERFAMILY RING/U-box 413 461 - -
Pumo6g00873 465 MobiDBLite consensus disorder prediction 28 90 - -
Pumo6g00873 465 SMART VWA_4 121 324 IPR002035 -
Pumo6g00873 465 SUPERFAMILY vWA-like 122 305 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00873 Pumo-Chr6 10897211 10902218 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00873 K16280 - gmx:100800161 864.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00873 6 10897211 10902218 Pumo6g00873 6 10897211 10902218 ECH
Pumo6g00873 6 10897211 10902218 Pumo1g00396 1 5649659 5654283 PCT