Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00396 ATGCATCTAGAGATAGGGACTTGGACAATTTTGGTTGCTATTGTGTGCATCTTGGTCTTTTTCCTGAAGGAGATTGTTATGGGAGGGAAGAGTTCAAAAGGGAGTGGTAGGAGGTATGATTTTGGTGCTTCTTCATCTTCATGGGATAATAACTATGGTGGATACCCCCCACAATCACCATACCCTTCTTATCAAACACCTCAGCACCCGCGTGCATCAGCATCAGCATCAGCTCCATTTTATGACTATGCACAACCAAAAAGGAAGTTGGATAAGAAGTATTCCAGGATAGCTGATAATTACCGTTCTTTGGATGAGGTTACTGCTGCACTTGCAAATGCTGGGCTGGAATCTTCTAATCTCATTGTTGGCATTGATTTCACAAAGAGCAATGAGTGGACAGGGAAGAGGTCATTCAATCGAAAAAGTTTACATGACATTGGAAGTGGTCAAAACCCTTATGAACAAGCAATTTCAATTATCGGGAAAACTTTATCTGCTTTCGATGAAGATAACTTGATTCCTTGTTTTGGATTTGGAGATGCGTCTACACATGACCAAGATGTATTCAGTTTCTATTCAGAAGAGAGGTTCTGCGATGGGTTTGAGGAAGTTCTGACACGATACAGACAAATTATTCCTTACCTCAAACTTGCAGGACCCACTTCATTTGCCCCTATTATTGAAATGGCTATGACTATTGTTGAGCAAAGTGGTGGCCAATATCATGTCTTGCTAATAATTGCAGATGGACAGGTGACTAGAAGCGTTGACACACAGCATGGCAACTTAAGTCCACAAGAGCAGAACACGATAGATGCAATAGTAAAAGCCAGTGAGTATCCACTGTCAATAGTTTTGGTGGGAGTTGGAGATGGACCATGGGATATGATGAGGGAATTTGATGATAACATACCTTCTCGGGCATTTGACAATTTTCAGTTTGTGAATTTTACTGAAATAATGACGAGGAATGTAGATTCAACCAGAAAAGAGACAGATTTTGCCCTTTCAGCTTTGATGGAGATACCTTCTCAGTACAAGGCAACCCTAGAGCTTGGCATATTGGGTTCACGGAGGGGACATTCACCAGATAGGGTTGCTCTACCCCCACCTCTTTATAGTAGGACTTCTTCCAGCATCAGCACAAAATCTACAAGGTCAAACAGTTTTCAGCAGAGGACACCTACACATACTAGCTATGATAGTGGTGTTCAACCAGAGCCATCATCAAGTTCTTTATATGATAATAAGGTTTGCCCGATTTGTCTTACCAATGGGAAGGATATGGCCTTTGGTTGTGGGCATCAGACTTGTTGCGAGTGTGGAGAAGACCTCCAATGCTGTCCCATTTGCCGGAGCACAATCCATACTAGAATAAGGCTTTACTAG 1392 0.421 MHLEIGTWTILVAIVCILVFFLKEIVMGGKSSKGSGRRYDFGASSSSWDNNYGGYPPQSPYPSYQTPQHPRASASASAPFYDYAQPKRKLDKKYSRIADNYRSLDEVTAALANAGLESSNLIVGIDFTKSNEWTGKRSFNRKSLHDIGSGQNPYEQAISIIGKTLSAFDEDNLIPCFGFGDASTHDQDVFSFYSEERFCDGFEEVLTRYRQIIPYLKLAGPTSFAPIIEMAMTIVEQSGGQYHVLLIIADGQVTRSVDTQHGNLSPQEQNTIDAIVKASEYPLSIVLVGVGDGPWDMMREFDDNIPSRAFDNFQFVNFTEIMTRNVDSTRKETDFALSALMEIPSQYKATLELGILGSRRGHSPDRVALPPPLYSRTSSSISTKSTRSNSFQQRTPTHTSYDSGVQPEPSSSSLYDNKVCPICLTNGKDMAFGCGHQTCCECGEDLQCCPICRSTIHTRIRLY 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00396 463 SUPERFAMILY vWA-like 119 302 IPR036465 -
Pumo1g00396 463 MobiDBLite consensus disorder prediction 361 413 - -
Pumo1g00396 463 Pfam Copine 143 356 IPR010734 -
Pumo1g00396 463 Pfam Zinc finger, C3HC4 type (RING finger) 417 457 - -
Pumo1g00396 463 CDD vWA_copine_like 97 347 IPR010734 -
Pumo1g00396 463 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 398 463 IPR013083 -
Pumo1g00396 463 MobiDBLite consensus disorder prediction 56 76 - -
Pumo1g00396 463 ProSiteProfiles Zinc finger RING-type profile. 420 453 IPR001841 -
Pumo1g00396 463 SMART VWA_4 118 321 IPR002035 -
Pumo1g00396 463 MobiDBLite consensus disorder prediction 56 73 - -
Pumo1g00396 463 SUPERFAMILY RING/U-box 413 459 - -
Pumo1g00396 463 PANTHER COPINE FAMILY PROTEIN 1 71 440 - -
Pumo1g00396 463 MobiDBLite consensus disorder prediction 373 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00396 Pumo-Chr1 5649659 5654283 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00396 K16280 - gmx:100798816 853.973
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00873 6 10897211 10902218 Pumo1g00396 1 5649659 5654283 PCT