Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00867 ATGATGGAGTGTTTCTCTGTGTCCTTAGCCTCTTTATGGGTTCTCCTTGCTCTCTGTTTTCTGAGTGTGTCATCTCAAAATATATCCGAGAGTGGCCTACAGCAAGCTAGCCTCCCACCAAGAGGTTGGAATTCCTATGATTCCTTTTGCTGGACAATTTCTGAAGAAGAATTCTTACAAAGTGCTGAAATAGTTTCTCAACGTCTCAAGGCTCATGGATATCAGTTTGTTGTGGTGGATTACCTCTGGTATAGGAAGAAAGTCAAGGGTGCTTATCCTGATTCTCTTGGATTTGACGTTATTGATGAATGGGGAAGGATGCTCCCTGACCCAGGAAGGTGGCCTTCTTCCATAGGTGGGAAGGGATTCAGTGAAGTAGCTAATAAAGTACATAGTTTGGGTTTGAAGTTTGGGATTCATGTTATGAGAGGGATAAGCACACAAGCTGTCAATGCAAACACCCCTATCCTAGATACAACAAAGGGAGGTGCTTATCAAGAATCTGGTCGAGTGTGGCGTGCAAAAGACATAGCAATGCCAGAAAGGGCTTGTGCTTGGATGCCTCACGGTTTCATGAGTGTAAATACGAAGTTGGGAGCTGGGAGAGCTTTTTTGAAATCCCTTTATGAGCAATATGCTGCATGGGGTGTTGATCTCGTGAAACATGACTGTGTGTTTGGTGATGACTTGGATTTAAATGAAATAAGCTATGTGTCGGAGGTTCTCAGTGAGCTTAATCGCCCTATTGTGTATTCTCTGTCTCCTGGAACCAGTGTGACACCAGCCATGGCCAAGGATGTCAGTGGACTAGTCAACATGTATCGAATAACAGGAGATGACTGGGATATATGGGAGGATGTCAAGGCTCATTTTGATGTAACAAGGGATTTTTCTACAGCTAATATGATAGGAGGAAAAGGTTTAAAGGGAAATTCCTGGCCTGATTTGGACATGCTACCATTTGGATGGCTAACTGATCCAGGTTCAAATGAAGGTCCACACAGGTTTAGTAAACTCACTCTAGAAGAAAAAAGGACACAGATGACTTTGTGGTCTTTGGCGAAGTCTCCCCTTATGTATGGGGGGGATGTGCGGAAGATCGATCCTACCACATATGAACTTATCACAAATCCTACCCTGCTTGAGATTAATTACTTCAGCTCAAATAATATGGAGTTTCCTTACGTCACAAGCTCAAATAACTTGAAGCACCCTGGAGGGAAAAAAAGAAGACCTAAGAAAGGAATAAAAGCATCATATACACATTCATTAGGTTTGACTGGCTGCAGTGAATCAAAGGCAAGTGGTTGGTCTATTGAAAGTTTTAACCAAGATCTTGAAAGAATCTGTTGGAAAAAGAGTGTAGAAAACAAGCATCAAGCCCCCTTCTGCGTACACAAGAGAGAACTTCAATTCAGATTGGATGGGGAGAGTATGTATCAAGAGGACTATCGAGGGAAACATCAATTAGTTGCAACTGACAGAATGAAATTTTGCTTGGACGCTTCTCCAAAACGAAAGGTTACTTCTAAAGAGTTCAAGAGAGGTACATTTTCTCCATGCAGATGGGATTCAAATCAGGTATGTTGA 1590 0.4226 MMECFSVSLASLWVLLALCFLSVSSQNISESGLQQASLPPRGWNSYDSFCWTISEEEFLQSAEIVSQRLKAHGYQFVVVDYLWYRKKVKGAYPDSLGFDVIDEWGRMLPDPGRWPSSIGGKGFSEVANKVHSLGLKFGIHVMRGISTQAVNANTPILDTTKGGAYQESGRVWRAKDIAMPERACAWMPHGFMSVNTKLGAGRAFLKSLYEQYAAWGVDLVKHDCVFGDDLDLNEISYVSEVLSELNRPIVYSLSPGTSVTPAMAKDVSGLVNMYRITGDDWDIWEDVKAHFDVTRDFSTANMIGGKGLKGNSWPDLDMLPFGWLTDPGSNEGPHRFSKLTLEEKRTQMTLWSLAKSPLMYGGDVRKIDPTTYELITNPTLLEINYFSSNNMEFPYVTSSNNLKHPGGKKRRPKKGIKASYTHSLGLTGCSESKASGWSIESFNQDLERICWKKSVENKHQAPFCVHKRELQFRLDGESMYQEDYRGKHQLVATDRMKFCLDASPKRKVTSKEFKRGTFSPCRWDSNQVC 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00867 529 CDD GH27 39 384 IPR002241 GO:0004553|GO:0005975
Pumo6g00867 529 SUPERFAMILY (Trans)glycosidases 36 385 IPR017853 -
Pumo6g00867 529 Gene3D Aldolase class I 30 387 IPR013785 -
Pumo6g00867 529 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 12 464 IPR002241 GO:0004553|GO:0005975
Pumo6g00867 529 Pfam Alpha galactosidase A 209 384 IPR002241 GO:0004553|GO:0005975
Pumo6g00867 529 PRINTS Glycosyl hydrolase family 27 signature 342 363 IPR002241 GO:0004553|GO:0005975
Pumo6g00867 529 PRINTS Glycosyl hydrolase family 27 signature 33 52 IPR002241 GO:0004553|GO:0005975
Pumo6g00867 529 PRINTS Glycosyl hydrolase family 27 signature 127 148 IPR002241 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00867 Pumo-Chr6 10841108 10846900 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00867 14 469 Glycoside Hydrolase AT3G26380 67.756 0.0 654
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00867 - - gmx:100783705 1040.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00867 6 10841108 10846900 Pumo6g00867 6 10841108 10846900 ECH
Pumo6g00867 6 10841108 10846900 Pumo1g00392 1 5612145 5617910 PCT