Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo1g00392 ATGAAGTGTTTCTCCTTATCCTCAATCTCTCTTTTTATTCTCCTTTATCTCTGCTCCGAGAGCGTGTCCTCTCAAAATGTATCCGAGAGTGAGCAGCAGCAAGCTAGCATTCCACCAAGAGGTTGGAACTCCTATGATTCCTTTTGCTGGACAATTTCTGAAGAAGAATTCTTACAAAGTGCCGAAATAGTTTCTCGGCGTCTCCATGATCATGGATACGAGTATGTTGTGGTGGATTACCTCTGGTATAGAAGGAAAGTAGAGGGTGCTTATCATGATTCTTTCGGATTTGATGTGATTGATGAATGGGGGAGGATGGTTCCTGACCCAGGAAGGTGGCCTTCTTCCGAAAATGGGAAAGGATTCACTGAAGTAGCTAATCAAGTACATAGCATGGGTTTAAAATTTGGGATTCATGTCATGAGAGGGATAAGCACACAAGCTGTCAACACAAACACCCCTATCCTTGATACAACAACGGGAGGTGCTTATCAAGAATCTGGTCGAGTATGGTATGCAAAAGACATAGCAATCCCAGAAAGGGCTTGTGCATGGATGCCTCATGGTTTCATGAGTGTAAATACAAAGTTGGGAGCTGGGAAAGCTTTTTTGAGATCTCTTTATGAGCAGTATGCTGCATGGGGTGTTGATTTTGTGAAACATGACTGTGTATTTGGGGATGACTTTGATTTAAATGAAATAAGCTACGTGTCTGAGGTTCTCAAGGAGTTTGATCGCCCCATTGTATATTCTTTGTCTCCTGGAACCAGTGTGACACCAGCAATGGCCAAGGATGTCAGTGGACTGGTCAATATGTATCGTATAACAGGAGATGACTGGGATACATGGGGGGATGTCAAAGCTCATTTTGATATAACAAGGGATTTTTCAAATGCTAATATGATAGGAGCAAAAGGTTTAATGGGGAACTCCTGGCCTGATTTGGACATGCTACCATTTGGATGGCTAACTGATCCTGGTTCAAATGAAGGTCCACATAGGTATAGTTACCTCAATCTAGAAGAGAAGAAGACACAGATGACTCTGTGGTCGATGGCAAAGTCTCCCCTTATGTATGGAGGGGATGTTCGGAAGATTGATCCTAGCACATATGATGTTATCACAAATCCTACCCTTCTGGAGATTAATTCTTTTAGCTCAAATAACATGGAGTTTCCTTATATCACAAGCGTGAATAGTGAAGATCAGGATCTTGGTGGGCAAATGAGAAGAAGCAGCAAAGAAATGAAAACAACCTATACTCATTCATTAGGCCTCACAAGCTGCACTGAGTCAAAGGCAAGTGGTTGGGCTAGTGAAAGTCTTAACCAATATCTTGAAAGAATATGTTGGAAAAGGAGTTTAGGACACAAGCATCTTGCCCCCTTCTGTGTGCACAAGAGAGAACTTTACTTCCCATTTGATGAAGTCAGTATGTATCAAGAGTATCATCAAAGGAAACATCATTTAGTTGCAACTAACAGAATAAAATTTTGCTTGGATGCTTCTCCAAAACGCAAGCTTACTTCTAAAGAGTTCAAGAGAGGGACATTTTCTCCCTGCAGGTGGGATTCAAATCAGATGTGGGAGTTGAACCCTAATGGGACCCTGGTGAATAGTTATTCTGGCTTGTGTGCAACAGTAGAGTCTAGTGAAGATACTATTAATTCTGGTGGCTTGCACTCTTGGATTGCTACAGGAAGAAAAGGAGAAGTCTATGTTGCTTTCTTCAATCTAAGTGAACAGAAGACGGTAATATCTGCACAAACATCAGACCTGGCTAAGGTTCTTCCTGGCAGAGACTTCAATTCTTGTCAGGGCAGTGAAGTGTGGAGTGGAGGTGCTATAGAAATAACCCAGGGGACGTTATCAACGGCAGTGGAAGTGCATGGAAGTGCACTAATTGTTCTGAATTGCAATTAG 1923 0.4212 MKCFSLSSISLFILLYLCSESVSSQNVSESEQQQASIPPRGWNSYDSFCWTISEEEFLQSAEIVSRRLHDHGYEYVVVDYLWYRRKVEGAYHDSFGFDVIDEWGRMVPDPGRWPSSENGKGFTEVANQVHSMGLKFGIHVMRGISTQAVNTNTPILDTTTGGAYQESGRVWYAKDIAIPERACAWMPHGFMSVNTKLGAGKAFLRSLYEQYAAWGVDFVKHDCVFGDDFDLNEISYVSEVLKEFDRPIVYSLSPGTSVTPAMAKDVSGLVNMYRITGDDWDTWGDVKAHFDITRDFSNANMIGAKGLMGNSWPDLDMLPFGWLTDPGSNEGPHRYSYLNLEEKKTQMTLWSMAKSPLMYGGDVRKIDPSTYDVITNPTLLEINSFSSNNMEFPYITSVNSEDQDLGGQMRRSSKEMKTTYTHSLGLTSCTESKASGWASESLNQYLERICWKRSLGHKHLAPFCVHKRELYFPFDEVSMYQEYHQRKHHLVATNRIKFCLDASPKRKLTSKEFKRGTFSPCRWDSNQMWELNPNGTLVNSYSGLCATVESSEDTINSGGLHSWIATGRKGEVYVAFFNLSEQKTVISAQTSDLAKVLPGRDFNSCQGSEVWSGGAIEITQGTLSTAVEVHGSALIVLNCN 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo1g00392 640 Pfam Alpha galactosidase C-terminal beta sandwich domain 558 637 IPR041233 -
Pumo1g00392 640 PRINTS Glycosyl hydrolase family 27 signature 32 51 IPR002241 GO:0004553|GO:0005975
Pumo1g00392 640 PRINTS Glycosyl hydrolase family 27 signature 126 147 IPR002241 GO:0004553|GO:0005975
Pumo1g00392 640 PRINTS Glycosyl hydrolase family 27 signature 341 362 IPR002241 GO:0004553|GO:0005975
Pumo1g00392 640 CDD GH27 38 383 IPR002241 GO:0004553|GO:0005975
Pumo1g00392 640 Gene3D - 552 639 IPR013780 -
Pumo1g00392 640 SUPERFAMILY (Trans)glycosidases 35 383 IPR017853 -
Pumo1g00392 640 CDD RICIN 524 567 IPR000772 -
Pumo1g00392 640 SUPERFAMILY Ricin B-like lectins 497 564 IPR035992 -
Pumo1g00392 640 Gene3D Aldolase class I 16 385 IPR013785 -
Pumo1g00392 640 Pfam Alpha galactosidase A 209 383 IPR002241 GO:0004553|GO:0005975
Pumo1g00392 640 Pfam Alpha galactosidase A 51 146 IPR002241 GO:0004553|GO:0005975
Pumo1g00392 640 SUPERFAMILY Glycosyl hydrolase domain 555 637 - -
Pumo1g00392 640 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 11 639 IPR002241 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo1g00392 Pumo-Chr1 5612145 5617910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo1g00392 2 469 Glycoside Hydrolase AT3G26380 68.230 0.0 663
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo1g00392 - - gmx:100777954 1274.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00867 6 10841108 10846900 Pumo1g00392 1 5612145 5617910 PCT