Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00841 ATGGGTGGTGGCGGGAGAGGAGGCAGGTCCCGCACTCAAAGAAAGCACTTCCGCCAGAGCAGAGAGAACGTGTGGAAGCGTTCCAAATCGGATCCCGATCCTTCTTCAACCGAAAGCAACAATCCCATGTGGACTCCCTTCGCCACTGAGAACGCCGCTTTCGATTTCTACTACAAAGAGCAGGGGATAGTGGACCCGCAACAGTGGGACCAATTCGTCTTAGTTCTCAGAACTCCATTGCCCGCAACCTTCAGAATCAACTCTAGTAGCCAGTTTTCCGACGACATTCGTTCTCAATTGGAGAATGACTTCCTGCATTCTCTTCGCGACGAGGTTGCTGAAGGAGGCGAGACGGAGGCTATTCGGCCGTTGCTGTGGTACCCTGGGAACTTTGCTTGGCATTCGAATTTTTCTAGGATGCAGCTCAGGAAGAACCGAACACTTGAGAGGTTCCATGAATTCTTAAAGCTAGAAAATGAGATTGGAAATATCACAAGACAGGAAGCTGTCAGTATGGTTCCTCCCCTCTTCTTGGATGTGCATTCAGATCATTTTGTGCTTGATATGTGTGCTGCACCAGGTTCAAAAACATTTCAATTGCTTGAGATTATACACCAATCATCTAAAGCAGGGTCACTACCTGATGGAATGGTTGTAGCAAATGATCTCGATGTCCAAAGATGTAATCTTCTCATCCACCAAACAAAAAGAATGTGCACAGCCAACCTAATTGTTACAAATCACGAAGCTCAGCACTTCCCAGGATGCCGTTTAAACAGGAATTATGAAAGGATGGAGTTAGATCACAATATTGGCCAACTGTTATTTGATCGTGTTCTGTGTGATGTCCCATGCAGCGGAGATGGTACCCTTCGTAAGGCACCTGATCTCTGGAGGAAATGGAACCCAGGGATGGGACATGGCCTTCACAGCCTACAAGTTTTAATTGCTATGCGAGGTTTATCTCTACTTAAAATTGGCGGAAGAATGGTCTATTCAACGTGCTCAATGAATCCTATTGAGAATGAAGCTGTGGTTGCTGAGGTTTTGCGAAGGTGTGGAGGGTCTGTTAAACTTGTTGATGTCTCTAGTGAGCTTCCACAACTTATTCGTCGGCCAGGTCTCAAGAGATGGAAGGTATATGACAAGGGCACTTGGTTGGTCTCTTATAAAGATGTTCCTAAGTATCGTAGAAGTGTAATTCTTTCCAGTATGTTTCCTTCTGGCAGAGGCCATCATGATCTTGTTGATGGTAGTTGTAGTGTTGACCCAGAGGACATTACTAATGGTATTAATGGAAATGCTGGAGATGGTGTTCAAGCAGTAGAGAATCCTGTGATATCTGAGTCTGCTGAGGAAGTTTGCGATTTCCCTCTAGAGCATTGCATGAGGGTAGTGCCTCATGATCAGAACACTGGAGCCTTCTTCATTGCTGTACTGCAAAAAGTTTCTCCTCTGCCAGCAATTACACAACAAACTAAAATAAAAATTGATGAGCAATATGTAGAACCAGCAAACCAGAGTCTTAATGATGCACAAGTACCGCAGATTACTTCACCAGAAAGTGAACATGAAGAAGTCTTGAAAGCAGTTTCAGAGGAAAATGTAGATGACAATGAACCCAATACCGAAGATTTGGAAGTTGGTCCTGTTACATGTGAAGAACAGAATTCCAAGGAAACTCAAGAGCCCGATAATGTACAAAACACAGTGAAGAGGGTTCCAGGCAAAAGAAAGCTACAAATTCAAGGCAAATGGAGGGGTGTTGACCCTGTTGTCTTTTTCAAAGATGAAACAATTATTAATAGTATAAGGGATTTCTATGGAATTGATGAGCGTTTTCCATTCAATGGTCACCTGGTTACAAGAAACAGTGATACAAATCATGTGAAAAGAATTTATTATATCTCCAAGTCAGTCAAGGATGTTCTTGAGTTGAACTTCAAAGTTGGGCAGCAACTTAAAATAACATCAATTGGCCTGAAGATGTTTGAAAGACAAACAGCGCTCCAAGGTAGCTCTGCACCATGTGCTTTCCGGATATCATCTGAAGGATTGCCCCTTATTCTCCCATACATAACCAAACAGACTCTGCATGCATCTCCCGTAGACTTCAAGAATCTTCTGCAGAACAAAGAAGTAAAATTTGAAGATTTTACTGATGCCAAGTTTGGTGAAAAGGCAGCAAACCTATTGCCAGGTTGTTGTGTGGTAATTCTTCACATAGGGAACACAGTTGCTGCAGAGTCTCTCAAAGTGGATGAGTCTACGATAGCCATTGGATGCTGGAAGGGTAGGGCGAGATTGTCAGTGATGGTTACTGCAATGGACTGCCAAGAACTACTTGAAAGGCTGTTAATACGTTTTGACACTGAAAAGGGTTCCTCTGGGCATGTGGACAAATCCTCTAATGATGTGGATGAAGTACAGCCTGTGCAAGAGTTGAACAATAAAAATGATGATGAGATAGTTACTGTGAGTTAA 2484 0.4328 MGGGGRGGRSRTQRKHFRQSRENVWKRSKSDPDPSSTESNNPMWTPFATENAAFDFYYKEQGIVDPQQWDQFVLVLRTPLPATFRINSSSQFSDDIRSQLENDFLHSLRDEVAEGGETEAIRPLLWYPGNFAWHSNFSRMQLRKNRTLERFHEFLKLENEIGNITRQEAVSMVPPLFLDVHSDHFVLDMCAAPGSKTFQLLEIIHQSSKAGSLPDGMVVANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCRLNRNYERMELDHNIGQLLFDRVLCDVPCSGDGTLRKAPDLWRKWNPGMGHGLHSLQVLIAMRGLSLLKIGGRMVYSTCSMNPIENEAVVAEVLRRCGGSVKLVDVSSELPQLIRRPGLKRWKVYDKGTWLVSYKDVPKYRRSVILSSMFPSGRGHHDLVDGSCSVDPEDITNGINGNAGDGVQAVENPVISESAEEVCDFPLEHCMRVVPHDQNTGAFFIAVLQKVSPLPAITQQTKIKIDEQYVEPANQSLNDAQVPQITSPESEHEEVLKAVSEENVDDNEPNTEDLEVGPVTCEEQNSKETQEPDNVQNTVKRVPGKRKLQIQGKWRGVDPVVFFKDETIINSIRDFYGIDERFPFNGHLVTRNSDTNHVKRIYYISKSVKDVLELNFKVGQQLKITSIGLKMFERQTALQGSSAPCAFRISSEGLPLILPYITKQTLHASPVDFKNLLQNKEVKFEDFTDAKFGEKAANLLPGCCVVILHIGNTVAAESLKVDESTIAIGCWKGRARLSVMVTAMDCQELLERLLIRFDTEKGSSGHVDKSSNDVDEVQPVQELNNKNDDEIVTVS 827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00841 827 FunFam S-adenosyl-L-methionine-dependent methyltransferase superfamily protein 49 391 - -
Pumo6g00841 827 MobiDBLite consensus disorder prediction 793 807 - -
Pumo6g00841 827 MobiDBLite consensus disorder prediction 17 33 - -
Pumo6g00841 827 MobiDBLite consensus disorder prediction 516 574 - -
Pumo6g00841 827 ProSitePatterns NOL1/NOP2/sun family signature. 276 287 IPR018314 GO:0003723|GO:0008168
Pumo6g00841 827 MobiDBLite consensus disorder prediction 554 569 - -
Pumo6g00841 827 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 56 483 IPR029063 -
Pumo6g00841 827 MobiDBLite consensus disorder prediction 1 44 - -
Pumo6g00841 827 Gene3D Vaccinia Virus protein VP39 51 398 IPR029063 -
Pumo6g00841 827 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 72 483 IPR001678 GO:0008168
Pumo6g00841 827 MobiDBLite consensus disorder prediction 522 536 - -
Pumo6g00841 827 MobiDBLite consensus disorder prediction 793 827 - -
Pumo6g00841 827 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 654 666 IPR023270 GO:0016428
Pumo6g00841 827 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 133 154 IPR023270 GO:0016428
Pumo6g00841 827 PRINTS RNA (C5-cytosine) methyltransferase NCL1 subfamily signature 361 380 IPR023270 GO:0016428
Pumo6g00841 827 PRINTS RNA (C5-cytosine) methyltransferase signature 187 197 IPR023267 GO:0001510
Pumo6g00841 827 PRINTS RNA (C5-cytosine) methyltransferase signature 327 343 IPR023267 GO:0001510
Pumo6g00841 827 PRINTS RNA (C5-cytosine) methyltransferase signature 277 289 IPR023267 GO:0001510
Pumo6g00841 827 PRINTS RNA (C5-cytosine) methyltransferase signature 465 482 IPR023267 GO:0001510
Pumo6g00841 827 Pfam 16S rRNA methyltransferase RsmB/F 177 360 IPR001678 GO:0008168
Pumo6g00841 827 PANTHER NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 13 796 IPR023267 GO:0001510
Pumo6g00841 827 MobiDBLite consensus disorder prediction 808 827 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00841 Pumo-Chr6 10484296 10491619 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00841 K15334 - gmx:100808859 1552.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00841 6 10484296 10491619 Pumo6g00841 6 10484296 10491619 ECH
Pumo6g00841 6 10484296 10491619 Pumo1g00371 1 5417552 5424272 PCT