LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo1g00371	ATGGGGAGAGGAAAAGGAGGGAAGAAGAGTCGCACTCAAAGAAAGCATTTCCAAGAGAGCCGAGAGAATGTGTGGAAGTCCAAACGTTCAAAATCAGATCCTTCCTCCGAGAATCCTATTCCTATTTGCAATCCCTTCGCTACTGAAAACCCCGCTTTCGATCACTATTACAAGGAGCAGGGAATCGTGTCCTCGGAAGAATGGGATGCATTCGTGCAAGTTCTCAGAACTCCTTTGCCCGCAGCATTCAGAATCAACTCCACTAGCCGGTTTCTTGCGGATATTCGATCCCAACTGGAGAATGATTTTGTGCATTCTCTTCAGGCCGAGGTTGTGGAAGGAGAAGATACAGAGGCTATTATGCCTTTGCCATGGTATCCCGAGAATCTTGCTTGGCATTCGAATTTCTCCCGTAAGCAGCTCAGGAAGAATCAAACACTTGGGAGGTTTCATGAATTCTTAAAGCTAGAAAATGAAATTGGAAATATTACAAGACAGGAAGCTGTCAGCATGGCACCTCCTTTGTTCTTGGATGTACATTCAAATCATTTTGTACTTGATATGTGTGCAGCACCAGGTTCAAAAACATTCCAATTGCTCGAGATTTTACACAAATCAACTAAAGCTGGATCTCTGCCTGTTGGAATGGTTATAGCAAATGATCTAGATATCCAAAGATGTAATCTTCTCATTCACCAAACAAAACGGATGTGCACAGCCAACTTGATCGTCACCAATCATGAAGCTCAACACTTCCCAGGATGTCTTTTAAATAGGAACTATGATAAAATGGAGCCAGATCAGCAAGACCAGCTATTATTTGATCGTGTTCTGTGTGATGTCCCATGCAGCGGAGATGGCACGCTTCGTAAGGCACCTGATCTCTGGAGGAAATGGAACACAGGGACAGGGAATGGGCTCCATAACCTACAAGTTCTAATTGCTATGCGAGGTGTATCTTTACTTAAAGTTGGGGGAAGAATGATCTATTCAACCTGCTCAATGAATCCTATTGAGAATGAAGCTGTTGTTGCAGAGGTTTTGCGGAGGTGTGGAGGGTCCATTGAACTTGTTGATGTCTCTAGTGAGCTTCCCCAACTTATTCGTCGACCAGGTCTTAAGAGATGGAAGGTATGTGACAAGGGCAAGTGGTTTGTCTCTTGCAAAGATGTTCCCATGCTTCGTAGAAATGTAGTTTTTCCCAGCATGTTTCCAAATGGTGGAAACTATCAGGATGTTGTTGATAGTAATTGTAATATCAGCGTTGGAGATGATATTATTATAGATGATGTTAATGGAAATTCTGAAGATGATGTTCAAGCAGCGGAGAATTCTGGGATGCATGAATTTACTGAGGAAGTTTCTGATTTCCCAATAGAGCGGTGCATGAGATTAGTGCCTCATGATCAGAATACTGGAGCCTTCTTTATTGCTGTATTGCAGAAAGTTTCTCCTCTGCCAGCAATTCAGGTAAAACCTAGAAAAGAAGTTGATAAACATGTTGACACAGCAAACCAGGGCAATGAGGATGCACAAGAATTGCAGGTTAATCCATTGGAAAGTACACCTGAAGAAATTTCAGAGGCTAATATTAATGACAATGGACCTAATACAGATTTGAAAGTCAGTTCTGTTACATGTGAAGAAGTGGATTTCAAGGAAGCCCAAGATCCCTGCAATGTAGAAAACATAACAAAGAATACTCCAGGCAAAAGAAAACTACAGATTCCAGGCAAATGGAGAGGCATTGACCCTGTAGTCTTCTTCAAAGATGAAGTAGTTATTAACAGCATAAACGCATTTTATGGTATTGATGAGCAGTTTCCATTCAATGGTCACCTTGTAACAAGAAATAGTGATACAAGCCACATTAAAAGAATTTACTATATCTCCAAGTCGGTCAAAGATGTTCTGGAGTTGAACTTCTCAGTTGGGCAGCAACTTAAGATAACTTCTGTTGGCCTGAAGATTTTTGAAAGACAGACGTCGTGTGAAGGTAGGTCTGCACCATGTGCTTTCCGGATCACTTCTGAAGGATTGCCCCTCATTCTCCCTCACATCACCAAACAGATTCTACATGCATCTGCTATAGACTTCAAGCATCTTCTGCAGTATAGAACTGTAAAATTTGCAGATTTTGTGGATGCTGAGTTTGGTGAAAAGGCTGCAAACCTAATGCCCGGCTGTTGTGTGGTAGTTCTGGGTGAAGGGAGCAGAGCTGCTACAGGGTCCCTCCAAGTGGATGAGTCAACAATAGCCATTGGATGCTGGAAGGGTAGAGCAAGTTTGACTATAATGGTTGGTGCATTAGAATGCCAAGAACTGCTCGAAAGGCTTTTAATGCGTCTAGACACAGTAACAGAAAAGGACTCCTCCATGCATGAGGACAAACCGTCTGATAACAAGGGAGATGAAGCACAAGAATCAAACGGTAAAATTGAAGATGTAGAAGTTACTGGGTGTTAA	2466	0.4221	MGRGKGGKKSRTQRKHFQESRENVWKSKRSKSDPSSENPIPICNPFATENPAFDHYYKEQGIVSSEEWDAFVQVLRTPLPAAFRINSTSRFLADIRSQLENDFVHSLQAEVVEGEDTEAIMPLPWYPENLAWHSNFSRKQLRKNQTLGRFHEFLKLENEIGNITRQEAVSMAPPLFLDVHSNHFVLDMCAAPGSKTFQLLEILHKSTKAGSLPVGMVIANDLDIQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCLLNRNYDKMEPDQQDQLLFDRVLCDVPCSGDGTLRKAPDLWRKWNTGTGNGLHNLQVLIAMRGVSLLKVGGRMIYSTCSMNPIENEAVVAEVLRRCGGSIELVDVSSELPQLIRRPGLKRWKVCDKGKWFVSCKDVPMLRRNVVFPSMFPNGGNYQDVVDSNCNISVGDDIIIDDVNGNSEDDVQAAENSGMHEFTEEVSDFPIERCMRLVPHDQNTGAFFIAVLQKVSPLPAIQVKPRKEVDKHVDTANQGNEDAQELQVNPLESTPEEISEANINDNGPNTDLKVSSVTCEEVDFKEAQDPCNVENITKNTPGKRKLQIPGKWRGIDPVVFFKDEVVINSINAFYGIDEQFPFNGHLVTRNSDTSHIKRIYYISKSVKDVLELNFSVGQQLKITSVGLKIFERQTSCEGRSAPCAFRITSEGLPLILPHITKQILHASAIDFKHLLQYRTVKFADFVDAEFGEKAANLMPGCCVVVLGEGSRAATGSLQVDESTIAIGCWKGRASLTIMVGALECQELLERLLMRLDTVTEKDSSMHEDKPSDNKGDEAQESNGKIEDVEVTGC	821

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo1g00371	821	FunFam	S-adenosyl-L-methionine-dependent methyltransferase superfamily protein	48	390	-	-
	Pumo1g00371	821	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	53	483	IPR029063	-
	Pumo1g00371	821	ProSitePatterns	NOL1/NOP2/sun family signature.	274	285	IPR018314	GO:0003723\|GO:0008168
	Pumo1g00371	821	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	648	660	IPR023270	GO:0016428
	Pumo1g00371	821	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	132	153	IPR023270	GO:0016428
	Pumo1g00371	821	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	359	378	IPR023270	GO:0016428
	Pumo1g00371	821	MobiDBLite	consensus disorder prediction	787	812	-	-
	Pumo1g00371	821	Pfam	16S rRNA methyltransferase RsmB/F	176	351	IPR001678	GO:0008168
	Pumo1g00371	821	MobiDBLite	consensus disorder prediction	787	821	-	-
	Pumo1g00371	821	Gene3D	Vaccinia Virus protein VP39	48	394	IPR029063	-
	Pumo1g00371	821	PRINTS	RNA (C5-cytosine) methyltransferase signature	275	287	IPR023267	GO:0001510
	Pumo1g00371	821	PRINTS	RNA (C5-cytosine) methyltransferase signature	325	341	IPR023267	GO:0001510
	Pumo1g00371	821	PRINTS	RNA (C5-cytosine) methyltransferase signature	465	482	IPR023267	GO:0001510
	Pumo1g00371	821	PRINTS	RNA (C5-cytosine) methyltransferase signature	186	196	IPR023267	GO:0001510
	Pumo1g00371	821	MobiDBLite	consensus disorder prediction	1	44	-	-
	Pumo1g00371	821	MobiDBLite	consensus disorder prediction	13	33	-	-
	Pumo1g00371	821	PANTHER	NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING	13	792	IPR023267	GO:0001510
	Pumo1g00371	821	ProSiteProfiles	SAM-dependent MTase RsmB/NOP-type domain profile.	71	483	IPR001678	GO:0008168

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo1g00371	Pumo-Chr1	5417552	5424272	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo1g00371	K15334		-	gmx:100808598	1521.52

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pumo6g00841	6	10484296	10491619	Pumo1g00371	1	5417552	5424272	PCT