Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00607 ATGGCTGAGGAGGCTCCAAACCAGACAACCACACCCCCAACAGCACCACCTCCACAGGAGTCAGTGGTGCAAGTGGAGGAAGTGGTGGTAACCGATGTTCCTCAGACTGAGAAGACAACAGCAACCACTGTTCCAGTTGAAAGAGATTCACAACCACAACCACAACCTGAGCCTGAGGAGCCAGAGAAGAAGCCCGTTGAGGAAACCGTTACTCTCGAGACTCACCTCTCCAAACCCAATAATGGTGACGACAACAACGATGACAAAATCCCTGAATTCAAGGAAGAAAGCACCAAAGTCTCTGACCTCCCAGAAAACGAGAACAAGGCGCTCCAAGAGCTCAAGAAGCTCGTTCAGGAAGCTCTCAACAACCACGAGTTCTCTTCCAAGGAAGAAAAGAAGCCACCAGCAACAACGACTCCAACTGCTGACAAGAAGGAAGAACAACAAGAACAAGTTGTAACTGAAACTAAAACTGATGCTGCCCCAGAAAAAACCGAGCAAGAGCAAGTTGAAACAAAGAAGGAGGAAGAAAAGAAGGAAGAAGAGAAGAAGGAAGAGGAAAAGAAGGATGAAGAAAAGAAGGAAGAAGTGAAAGAAACTAAGGAAGAAGCTGCTGTGGATGATGATGGAGCAAAAACTGTGGAGGCCATTGAAGAGACCGTTGTTGCTGTCTCTTCTTCTGTTCAGCCTCAAGCTGAAGAGAAAGCTTCTGAAACAGAAGCCAAAGAGGAAGCTTCAACGCCACTTCCACCTGAAGAGGTTTCTATTTGGGGGATACCACTGCTTGCAGATGAGAGGAGCGATGTGATTCTGCTGAAGTTTCTGCGTGCGAGAGAGTTCAAGGTGAAGGAGGCATTCACCATGCTGAAGAACACGATCCGGTGGAGGAAGGAGTTTGGGATGGAGGAGCTGATGGAGGAGAAGCTGGGGGATGAGTTGGAGAAGGTGGTGTTCATGCATGGCTATGACAAGGAGGGTCACCCTGTGTGTTACAACATATATGGGGAGTTCCAGAACAAGGAGTTGTACAAGAAGACCTTTTCTGATGAGGAGAAGAGGGAGAAGTTCCTGAGGTGGAGAATTCAGTTCCTGGAGAAGAGTATAAGGAAGCTGGACTTCAACCCTGGTGGCATATGCACCATTGTTCAGGTCAATGATCTTAAGAATTCCCCTGGACCTGCCAAGTGGGAACTTAGACAAGCCACCAAAAATGCCCTACAATTGCTTCAAGACAACTACCCTGAATTTGTTGCCAAACAGGTGTTCATTAATGTGCCATGGTGGTACCTGGCAGTGAATAGGATGATAAGCCCTTTTCTTACTCAGAGGAGCAAAAGCAAGTTTGTCTTTGCTGGGCCTTCCAAATCAACGGAGACCCTTTTGAGATACATAGCTCCAGAGCAGCTTCCCGTGAAGTATGGTGGACTAAGCAAAGATGGGGAGTTCGGAAATACCGATGCTGTTACAGAAATCACAGTGAGGCCGGCAGCAAAACATACTGTGGAATTTTCAGTTACTGAGAACTGCTTACTCTCTTGGGAGCTGAGAGTAATAGGGTGGGAAGTAAACTATGGTGCAGAATTTGTGCCAAGCTCAGAAGGAAGCTACACAGTAATTGTCCAGAAGGCTAGAAAGGTTGCTTCATCAGAAGAACCAGTGCTTTGCAACAGTTTTAAGGTTGGTGAACCTGGGAAAGTTGTTCTCACCATTGACAACACAAGTTCTAAGAAGAAGAAGCTCTTGTACCGCTTGAAGACCAAGCCTTCCCCCTCTGACTAA 1782 0.4697 MAEEAPNQTTTPPTAPPPQESVVQVEEVVVTDVPQTEKTTATTVPVERDSQPQPQPEPEEPEKKPVEETVTLETHLSKPNNGDDNNDDKIPEFKEESTKVSDLPENENKALQELKKLVQEALNNHEFSSKEEKKPPATTTPTADKKEEQQEQVVTETKTDAAPEKTEQEQVETKKEEEKKEEEKKEEEKKDEEKKEEVKETKEEAAVDDDGAKTVEAIEETVVAVSSSVQPQAEEKASETEAKEEASTPLPPEEVSIWGIPLLADERSDVILLKFLRAREFKVKEAFTMLKNTIRWRKEFGMEELMEEKLGDELEKVVFMHGYDKEGHPVCYNIYGEFQNKELYKKTFSDEEKREKFLRWRIQFLEKSIRKLDFNPGGICTIVQVNDLKNSPGPAKWELRQATKNALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRSKSKFVFAGPSKSTETLLRYIAPEQLPVKYGGLSKDGEFGNTDAVTEITVRPAAKHTVEFSVTENCLLSWELRVIGWEVNYGAEFVPSSEGSYTVIVQKARKVASSEEPVLCNSFKVGEPGKVVLTIDNTSSKKKKLLYRLKTKPSPSD 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00607 593 PANTHER PATELLIN-1 150 590 IPR044834 GO:0008289
Pumo6g00607 593 SUPERFAMILY CRAL/TRIO N-terminal domain 100 308 IPR036273 -
Pumo6g00607 593 Coils Coil 164 205 - -
Pumo6g00607 593 Gene3D - 229 299 - -
Pumo6g00607 593 CDD SEC14 313 477 IPR001251 -
Pumo6g00607 593 SMART sec14_4 312 479 IPR001251 -
Pumo6g00607 593 MobiDBLite consensus disorder prediction 53 71 - -
Pumo6g00607 593 MobiDBLite consensus disorder prediction 125 210 - -
Pumo6g00607 593 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 488 586 IPR036598 -
Pumo6g00607 593 Gene3D - 302 492 IPR036865 -
Pumo6g00607 593 Coils Coil 111 131 - -
Pumo6g00607 593 MobiDBLite consensus disorder prediction 80 114 - -
Pumo6g00607 593 SUPERFAMILY CRAL/TRIO domain 317 479 IPR036865 -
Pumo6g00607 593 PRINTS Cellular retinaldehyde-binding protein signature 271 293 - -
Pumo6g00607 593 PRINTS Cellular retinaldehyde-binding protein signature 434 453 - -
Pumo6g00607 593 ProSiteProfiles GOLD domain profile. 486 587 IPR009038 -
Pumo6g00607 593 MobiDBLite consensus disorder prediction 1 210 - -
Pumo6g00607 593 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 307 482 IPR001251 -
Pumo6g00607 593 Gene3D GOLD domain 493 587 - -
Pumo6g00607 593 SMART CRAL_TRIO_N_2 268 293 IPR011074 -
Pumo6g00607 593 MobiDBLite consensus disorder prediction 224 251 - -
Pumo6g00607 593 MobiDBLite consensus disorder prediction 33 50 - -
Pumo6g00607 593 Pfam CRAL/TRIO domain 316 476 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00607 Pumo-Chr6 7669273 7673177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00607 272 471 Acyl Lipid Metabolism Gene Families AT1G55840 27.488 3.83e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00607 - - gmx:100788197 852.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00607 6 7669273 7673177 Pumo6g00607 6 7669273 7673177 ECH
Pumo6g00607 6 7669273 7673177 Pumo10g01779 10 23431017 23434822 PCT