Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01779 ATGGCTGAGGAAGTTCCAAAGACAAGCACAACTCAAGAGGAAGTGGTGGTCACTGACGTGGCACCTCCTGAGAAACCAGACACAGACACCACCAACGTAGACGCACAACAACAACAACAAGCCTCGCCGGAGAAGGAGAAGGAGAACGTTCCCGAAACTGAAACCGAGTCCGAGGTTTCCAAACCAAGCGGTGACGAAACCATTCCTGAATCCGGTTCGTTCAAGGAAGAAAGCACCATTGTCTCCGACCTACCAGAAACCGAGAAAAAGGCTCTGCATGAACTTAAACAACTCATTCAAGAAGCGCTCAACAAACACGAGTTCTCTGCGCTACCGAGTAACCATCCGAAAGATGAAAAACCCGAAGATGGAACCGACAACAAGGAAGAAGAGAAGGAAAACGTTGCTGTTGCTGATGCTGACGTGGCAGAAGCGACACAAAAAGAAGCTGAGGTTGTTGAAGAGAAAGTGGTTGTTTCTGCTTCTGCTGACGAGGATGGAGCGAAAACCGTTGAGGCCATTGAAGAGAGCGTTGTGTCCGTCACTGTTTCCGAGGAAGCAGCGAAGGTGGAAGAAGCTGTTTCTGCTTCTCCTCCTCCTCCCGAAGAAGTTTCGATTTGGGGTGTGCCGCTTCTTGCTGATGAGAGGAGCGACGTGATTCTTTTGAAGTTTCTGCGAGCGCGGGACTTCAAGGTGAAGGACGCGTTCGCGATGATAAAGAGCACGATCCGGTGGAGGAAGGAGTTCGGGATGGAGGAGTTGCTGGAGGAGGAGCTGGGTGATGATTTGGAGAAAGCAGTGTACATGCATGGCTTTGACAAGGAGGGTCACCCTGTGTGTTACAACATCTATGGGGAGTTTCAGAACAAGGAGTTGTATAAGAAGACTTTCTCTGATGAGGAGAAGAGGCACAGGTTTCTCAGGTGGAGGATTCAGTTCCTGGAGAAGAGTATCAGGAAGCTGGATTTTACCCCTGGTGGGATAAGCACCATTGTTCAGGTTAATGATCTCAAGAATTCTCCTGGACCTGCCAAGTGGGAGCTTAGACAGGCTACCAAACAGGCCCTGCAGCTGCTTCAGGATAACTATCCTGAATTTGTAGCCAAACAGGTGTTTATCAATGTGCCATGGTGGTACTTGGCAGTGAACAGGATGATAAGCCCTTTTCTTACTCAGAGAACCAAAAGCAAGTTTGTCTTTGCTGGACCTTCCAAATCAGCTGAGACCCTTTTGAGGTACATTGCTGCGGAGCAACTTCCGGTCAAGTATGGTGGACTAAGCAAAGATGGGGAGTTCGGAATTTCCGATGCTGTTACAGAAATTACAGTGAAGCCAGCAGCAAAACATACCGTGGAGTTTCCAGTTACTGAGAACTCCCTACTCTCTTGGGAACTCAGAGTAATAGGGTGGGATGTAAGCTATGGTGCAGAGTTTGTGCCAACTTCAGAGGGAAGCTATACTGTGATCATCCAGAAGGCTAGAAAGGTTGCTTCATCAGAAGAACCGGTGCTTTGCAACAACTACAAAATTGGTGAACCTGGGAAAGTGGTTCTCACCATTGACAATCAAAGCTCTAAGAAGAAGAAGCTCTTGTACCGCTTGAAGGTGAAGCCTTCTTCTGACTGA 1626 0.4834 MAEEVPKTSTTQEEVVVTDVAPPEKPDTDTTNVDAQQQQQASPEKEKENVPETETESEVSKPSGDETIPESGSFKEESTIVSDLPETEKKALHELKQLIQEALNKHEFSALPSNHPKDEKPEDGTDNKEEEKENVAVADADVAEATQKEAEVVEEKVVVSASADEDGAKTVEAIEESVVSVTVSEEAAKVEEAVSASPPPPEEVSIWGVPLLADERSDVILLKFLRARDFKVKDAFAMIKSTIRWRKEFGMEELLEEELGDDLEKAVYMHGFDKEGHPVCYNIYGEFQNKELYKKTFSDEEKRHRFLRWRIQFLEKSIRKLDFTPGGISTIVQVNDLKNSPGPAKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSAETLLRYIAAEQLPVKYGGLSKDGEFGISDAVTEITVKPAAKHTVEFPVTENSLLSWELRVIGWDVSYGAEFVPTSEGSYTVIIQKARKVASSEEPVLCNNYKIGEPGKVVLTIDNQSSKKKKLLYRLKVKPSSD 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01779 541 ProSiteProfiles GOLD domain profile. 435 536 IPR009038 -
Pumo10g01779 541 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 436 538 IPR036598 -
Pumo10g01779 541 PANTHER PATELLIN-1 38 539 IPR044834 GO:0008289
Pumo10g01779 541 Gene3D GOLD domain 442 537 - -
Pumo10g01779 541 MobiDBLite consensus disorder prediction 45 63 - -
Pumo10g01779 541 Coils Coil 128 148 - -
Pumo10g01779 541 MobiDBLite consensus disorder prediction 1 88 - -
Pumo10g01779 541 MobiDBLite consensus disorder prediction 29 44 - -
Pumo10g01779 541 Pfam CRAL/TRIO domain 265 425 IPR001251 -
Pumo10g01779 541 SMART CRAL_TRIO_N_2 217 242 IPR011074 -
Pumo10g01779 541 SUPERFAMILY CRAL/TRIO N-terminal domain 79 258 IPR036273 -
Pumo10g01779 541 MobiDBLite consensus disorder prediction 103 134 - -
Pumo10g01779 541 CDD SEC14 267 426 IPR001251 -
Pumo10g01779 541 Pfam CRAL/TRIO, N-terminal domain 190 240 IPR011074 -
Pumo10g01779 541 Gene3D - 202 441 IPR036865 -
Pumo10g01779 541 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 256 431 IPR001251 -
Pumo10g01779 541 MobiDBLite consensus disorder prediction 1 16 - -
Pumo10g01779 541 MobiDBLite consensus disorder prediction 64 80 - -
Pumo10g01779 541 MobiDBLite consensus disorder prediction 111 134 - -
Pumo10g01779 541 SUPERFAMILY CRAL/TRIO domain 266 428 IPR036865 -
Pumo10g01779 541 SMART sec14_4 261 428 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01779 Pumo-Chr10 23431017 23434822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo10g01779 221 420 Acyl Lipid Metabolism Gene Families AT5G47730 28.241 3.88e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01779 - - gmx:100805585 836.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01779 10 23431017 23434822 Pumo10g01779 10 23431017 23434822 ECH
Pumo6g00607 6 7669273 7673177 Pumo10g01779 10 23431017 23434822 PCT