Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00579 ATGGAAACAGTGAGGGCTAGAGAAGGAGGAATAGCCCAAGTGGGTCTAGGTGATGGCGTAGCCAACGACAGCACTGAGATTGAACTCAACAAAATCCGTCTCCTCAGGGCAACTCTTGAAACACGTGATCCCTCTTCTAAGGAAGAGGATGACTTTATGATCAGAAGATTCCTGCGTGCTCGTGATCTAGATGTGGAGAAGGCTTCGGCAATGTTCCTCAAGTACTTGAAATGGAGACATTCATTTGTTCCAAATGGTTCTGTATCTGTGTCAGATGTTCCAAACGAACTTGCACAGGACAAGGTGTTTGTTCAAGGACGTGACAAGATAGGTCGACCTATACTTATTGTCATCGGTGGAAGACATTTTCAGAACAAAAATGGTCTGGATGAATTCAAACGGTTTGTTGTCTATGTTCTTGATAAAGTATGTGCAAGTATGCCACCTGGGCAAGAAAAGTTTGTTGGTATAGCAGAACTTAAGGGATGGGGATACTCAAACAGTGACGTGCGTGGATACATTAGTGCTCTATCCATTTTGCAGGGTTACTACCCCGAAAGATTGGGGAAGTTGTTTATTGTGAATGCACCATACATTTTTATGAAAGTGTGGCAAATGGTTTACCCGTTCATTGACAACAAAACCAAGAAGAAGATAGTATTTGTGGAGAAAAATAAGGTGAAATCAACACTACTAGAAGAGATGGACGAAAGTCAGGTCCCAGAGATATTTGGTGGCCCATTGCTATTAGTCCCAATTCAGGATAGCTAA 771 0.4241 METVRAREGGIAQVGLGDGVANDSTEIELNKIRLLRATLETRDPSSKEEDDFMIRRFLRARDLDVEKASAMFLKYLKWRHSFVPNGSVSVSDVPNELAQDKVFVQGRDKIGRPILIVIGGRHFQNKNGLDEFKRFVVYVLDKVCASMPPGQEKFVGIAELKGWGYSNSDVRGYISALSILQGYYPERLGKLFIVNAPYIFMKVWQMVYPFIDNKTKKKIVFVEKNKVKSTLLEEMDESQVPEIFGGPLLLVPIQDS 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00579 256 CDD SEC14 102 246 IPR001251 -
Pumo6g00579 256 Pfam CRAL/TRIO domain 101 246 IPR001251 -
Pumo6g00579 256 SUPERFAMILY CRAL/TRIO domain 93 248 IPR036865 -
Pumo6g00579 256 SMART sec14_4 96 249 IPR001251 -
Pumo6g00579 256 Gene3D - 21 251 IPR036865 -
Pumo6g00579 256 PANTHER OS03G0850700 PROTEIN 23 255 - -
Pumo6g00579 256 SMART CRAL_TRIO_N_2 50 75 IPR011074 -
Pumo6g00579 256 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 90 252 IPR001251 -
Pumo6g00579 256 SUPERFAMILY CRAL/TRIO N-terminal domain 20 85 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00579 Pumo-Chr6 7370071 7377018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00579 56 242 Acyl Lipid Metabolism Gene Families AT5G47730 29.064 3.55e-14 69.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00579 - - gmx:548015 456.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00579 6 7370071 7377018 Pumo6g00579 6 7370071 7377018 ECH
Pumo6g00579 6 7370071 7377018 Pumo10g01814 10 23809748 23812678 PCT