Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00577 ATGGGCAACTGCTGCTCCGACGTCGCCGGCGGCCAAACGGCCATCGGCGGCACCGCCGGTGGCCACCTCAATCCGGCCAAGGCTCCCAACGACGCCGTCGATCGCTTCCTCAGGTCTCGCGGCTACAACGGCCTCTTCTCTCAGATCGAGTTGTCCTTCTCTGCTTCTGGCCTGCGTGATCGGGATGTGCTCTCCAAGAGTGATCCAATGATGGTTCTTTATGCAAGAGGAAAAAATGGAGCACTCGAGGAACTTGGCCGGACAGAAGTAATTCTGAATTCATTAAATCCTACATGGATTACTAAACACACTCTCATATATCATTTTGAGGTTGTTCAGGTTTTAGTGTTTCGTGTGTATGATGTTGATACTCAGTTTCACAACATAGATGTAAAGATGCTTAAGCTAGAAGAGCAGCAATATCTAGGTGAGGCAACCTGTGCATTATCTGAGATAATTACAAAGTTTGATCGATCAATGACACTAGATTTACACAGAAGAGAAGATTCTATCAGATCTACCCAGTCCCAAAACTGTGGAAAGCTCTCAGTGCATGCTGAGGAATGTATTAGCTCAAAGACTACAATAGAGATGATTCTCAGGTGTTCAGATTTGGAATATAGGGATCTCTTCTCAAGAAGTGATCCCTTTTTATTGGTATCAAAAGTTGTGGAAGGTGGTAGCCATATTCCAATTTGTAAAACAGAAGTTATAAAGAATGATCACAACCCAATATGGAAGCCAGTGTTCTTGAATATTCAACAAGTAGGAAGCAAGGAAAGTCCTTTGATAATAGAGTGCTATAACTTCAATAGCAATGGCAAACATGATTTGATGGGAAAAGTGCAGAAATCTTTGGTGGAGTTGGAGAAGCTTTATTCAGGTGGCCAAGGAGAAAATTTTATTTCGTCTGCTGCTGCGGGTCATAATTCTCATAACAAGGTGTTAAAGAGCCAGTTATTTGTGGACAAATTTGCTGAAAGTGTCCAATATAGTTTCCTGGATTACTTGGCTGGGGGATTTGAATTGAACTTCATGGTGGCCATTGATTTTACAGCTTCAAATGGAAATCCACGCCTTCCAGATTCTTTGCATTATATTGATCCTTCAGGACGGCCAAATGCATACCAGAGGGCAATTTTAGAGGTTGGGGAGGTGTTACAGTATTATGATTCAGACAAGCGATTTCCTACATGGGGATTTGGAGCACGACCAATTGATGCTCCTGTCTCCCATTGTTTCAACTTGAATGGAAGCAGCCATTACTGTGAGGTGGAAGGCACCCAAGGAATTATGATGGCATACACAAGTGCCCTGCTTAACGTTTCTCTTGCAGGACCAACTCTTTTTGGACCTGTCATATCCAATGCTGCCCTGATTGCCAGCCAATCTGTAGCAAATGGTGGAAGAAAGTACTTTGTTTTGTTAATCATCACAGATGGAGTAGTGACAGATCTCCAAGAAACAAAAGATGCTCTCGTTAAAGCATCTGATCTACCATTATCAATCCTTATTGTTGGCGTAGGAGGAGCTGATTTCAAAGAAATGGAGGTTTTGGATGCTGACAAAGGAGAGAGGCTTGAAAGTTCATCTGGTCGTGTTGCTTCGCGTGACATAGTCCAGTTTGTTCCATTTCGTGACGTTCAAAGTGGAGAAATTTCAGTAGTTCAAGCACTTCTAGCTGAATTACCTACTCAATTTTTAAGTTACATGCGGAGCAGAAATATCCAACCGAATCCCTAG 1743 0.4291 MGNCCSDVAGGQTAIGGTAGGHLNPAKAPNDAVDRFLRSRGYNGLFSQIELSFSASGLRDRDVLSKSDPMMVLYARGKNGALEELGRTEVILNSLNPTWITKHTLIYHFEVVQVLVFRVYDVDTQFHNIDVKMLKLEEQQYLGEATCALSEIITKFDRSMTLDLHRREDSIRSTQSQNCGKLSVHAEECISSKTTIEMILRCSDLEYRDLFSRSDPFLLVSKVVEGGSHIPICKTEVIKNDHNPIWKPVFLNIQQVGSKESPLIIECYNFNSNGKHDLMGKVQKSLVELEKLYSGGQGENFISSAAAGHNSHNKVLKSQLFVDKFAESVQYSFLDYLAGGFELNFMVAIDFTASNGNPRLPDSLHYIDPSGRPNAYQRAILEVGEVLQYYDSDKRFPTWGFGARPIDAPVSHCFNLNGSSHYCEVEGTQGIMMAYTSALLNVSLAGPTLFGPVISNAALIASQSVANGGRKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGGADFKEMEVLDADKGERLESSSGRVASRDIVQFVPFRDVQSGEISVVQALLAELPTQFLSYMRSRNIQPNP 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00577 580 CDD vWA_copine_like 313 567 IPR010734 -
Pumo6g00577 580 FunFam Protein BONZAI 1 51 195 - -
Pumo6g00577 580 SMART VWA_4 342 539 IPR002035 -
Pumo6g00577 580 CDD C2A_Copine 47 168 - -
Pumo6g00577 580 ProSiteProfiles C2 domain profile. 178 303 IPR000008 -
Pumo6g00577 580 FunFam Protein BONZAI 1 isoform A 196 315 - -
Pumo6g00577 580 Gene3D C2 domain 195 313 IPR035892 -
Pumo6g00577 580 PANTHER COPINE 32 579 IPR045052 GO:0005544
Pumo6g00577 580 SMART C2_3c 199 301 IPR000008 -
Pumo6g00577 580 SMART C2_3c 48 161 IPR000008 -
Pumo6g00577 580 ProSiteProfiles C2 domain profile. 29 164 IPR000008 -
Pumo6g00577 580 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 198 290 IPR035892 -
Pumo6g00577 580 CDD C2B_Copine 196 291 IPR037768 -
Pumo6g00577 580 Gene3D C2 domain 52 194 IPR035892 -
Pumo6g00577 580 ProSiteProfiles VWFA domain profile. 344 563 IPR002035 -
Pumo6g00577 580 Pfam C2 domain 199 290 IPR000008 -
Pumo6g00577 580 Pfam C2 domain 54 154 IPR000008 -
Pumo6g00577 580 SUPERFAMILY vWA-like 343 525 IPR036465 -
Pumo6g00577 580 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 53 165 IPR035892 -
Pumo6g00577 580 Pfam Copine 363 578 IPR010734 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00577 Pumo-Chr6 7327502 7334579 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00577 - - gmx:100807801 1117.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00577 6 7327502 7334579 Pumo10g01817 10 23888821 23900048 PCT