Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01817 ATGGGAAACTGCTTCTCCGAAGTCGCCGCAGGCCGCGCCGCCATCGGCGGCACCGCCGGCGATTTCCGGAATCCGGCCGGCGCTCCAAACGACGCCGTCGAGAACTTCCTTAGGTCCCGCGGCCACCACGGCCTCTTCTCTCAGATCGAGTTATCGTTTTCCGCTTCTGGCTTGCGTGATCGTGATGTGCTCTTCAAGAGTAATCCGATTATGGTTCTTTATGCAAGAGGAAAAAATGGAGCACTTGAGGAGCTTCGCCGCACGGAAGTAGTTCTGAATTCATCAAGTCCCACATGGATTACTAAACACACCCTCATTTATCATTTTGAGGTTGTTCAGGTTTTAGTGTTTCGTGTGTATGACGTTGATACTCAGTTTCACAATGTAGATATAAAGATCCTTGAGCTAGATGAGCAGCAATTTCTTGGCGAGGCAACCTGTGTACTATCTCAGATAATCACACAACCTGATAAATCATTGACTATAGATCTACACACAGAAGATTCTATCAGATCTACCCTTCCCAAAAACTGTGGGAAACTCAAGGTGCATGCTGAGGAATGTATTAGCTCAAAGACCGCAATAGAGATGGTGTTCAGGTGTTCAGATTTGGAATACAAGGATCTCTTCTCAAGAACTGACCCCTTTTTATTGATATCAAAAGTTGCGGAAGGTGGTGCCCAAATTCCAATTTGCAAAACAGAAGTTATAAGGAATGATCTCAACCCAATATGGAAGTCGGTGTTTGTAAATATTCAACAAGTAGGAAGCAAGGACAGTCCTTTGATAATAGAGTGCTATAACTTTAATACCAATGGAAAACATGATTTAATGGGAAAAGTTCAGAAATCTTTGGCGGAGTTGGAGAACATTCATAATAATGGCCAAGGCGAAAATTTATTTTTGCCTTCTGCTGGTGGACAAAACCATGATAACAAGGTGTTGAAGAGCCAACTATTTGTGGAAAAATTTACTGAAAGTATCCAATATACTTTCTTGGATTACTTGGCAGGGGGATTTGAATTGAACTTCATGGTGGCTGTTGACTTTACAGCTTCAAATGGAAATCCACGCCTTCCAGATTCTTTGCATTACATTGATCCTTCAGGACGGCCAAATGCATACCAGAGGGCAATTGTCGAGGTTGGGGAAGTGTTACAGTTTTATGATTCAGACAAACGATTTCCTACTTGGGGATTTGGGGCACGACCAATTGATGGTCCTGTTTCCCATTGTTTCAACTTGAATGGAAGTAGTCATTACTGTGAGGTGGAAGGGATCCAAGGAATTATGATGGCTTACACAAGTGCCCTGCTTAATGTATCTCTTGCAGGACCTACACTTTTTGGACCGGTCATAAGCACCGCTGCACTGATTGCCAGCCAATCTGTAGCAAATGGTGGAAGAAAGTACTTTGTTTTATTAATAATCACAGATGGAGTAGTGACAGATCTCCAAGAAACAAAAGATGCTATTGTTAAAGCATCTGACCTGCCATTATCAATCCTTGTTGTTGGGGTAGGAGGAGCTGATTTCAAAGAAATGGAGGTTTTGGATGCAGACAAGGGAGAGAGGCTAGAAAGTTCATATGGACGCGTTGCTTCACGTGATATAGTCCAATTTGTTCCATTTCGGGAGGTTCAAAGTGGATTTTCAGTTGTTCAAGCACTTCTAGCAGAATTACCGACTCAATTTTTAACTTACGTGCGGAGCAGAAATATTCAACCGAGCCTCTAG 1737 0.4301 MGNCFSEVAAGRAAIGGTAGDFRNPAGAPNDAVENFLRSRGHHGLFSQIELSFSASGLRDRDVLFKSNPIMVLYARGKNGALEELRRTEVVLNSSSPTWITKHTLIYHFEVVQVLVFRVYDVDTQFHNVDIKILELDEQQFLGEATCVLSQIITQPDKSLTIDLHTEDSIRSTLPKNCGKLKVHAEECISSKTAIEMVFRCSDLEYKDLFSRTDPFLLISKVAEGGAQIPICKTEVIRNDLNPIWKSVFVNIQQVGSKDSPLIIECYNFNTNGKHDLMGKVQKSLAELENIHNNGQGENLFLPSAGGQNHDNKVLKSQLFVEKFTESIQYTFLDYLAGGFELNFMVAVDFTASNGNPRLPDSLHYIDPSGRPNAYQRAIVEVGEVLQFYDSDKRFPTWGFGARPIDGPVSHCFNLNGSSHYCEVEGIQGIMMAYTSALLNVSLAGPTLFGPVISTAALIASQSVANGGRKYFVLLIITDGVVTDLQETKDAIVKASDLPLSILVVGVGGADFKEMEVLDADKGERLESSYGRVASRDIVQFVPFREVQSGFSVVQALLAELPTQFLTYVRSRNIQPSL 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01817 578 SMART C2_3c 198 297 IPR000008 -
Pumo10g01817 578 SMART C2_3c 48 161 IPR000008 -
Pumo10g01817 578 ProSiteProfiles VWFA domain profile. 343 557 IPR002035 -
Pumo10g01817 578 Gene3D C2 domain 194 312 IPR035892 -
Pumo10g01817 578 CDD C2A_Copine 47 166 - -
Pumo10g01817 578 ProSiteProfiles C2 domain profile. 177 301 IPR000008 -
Pumo10g01817 578 CDD vWA_copine_like 312 565 IPR010734 -
Pumo10g01817 578 ProSiteProfiles C2 domain profile. 28 162 IPR000008 -
Pumo10g01817 578 Pfam Copine 362 576 IPR010734 -
Pumo10g01817 578 Gene3D C2 domain 52 193 IPR035892 -
Pumo10g01817 578 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 54 166 IPR035892 -
Pumo10g01817 578 SUPERFAMILY vWA-like 342 524 IPR036465 -
Pumo10g01817 578 CDD C2B_Copine 195 288 IPR037768 -
Pumo10g01817 578 SMART VWA_4 341 538 IPR002035 -
Pumo10g01817 578 FunFam Protein BONZAI 1 isoform A 195 314 - -
Pumo10g01817 578 FunFam Protein BONZAI 1 51 194 - -
Pumo10g01817 578 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 198 293 IPR035892 -
Pumo10g01817 578 PANTHER COPINE 34 577 IPR045052 GO:0005544
Pumo10g01817 578 Pfam C2 domain 54 158 IPR000008 -
Pumo10g01817 578 Pfam C2 domain 198 292 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01817 Pumo-Chr10 23888821 23900048 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01817 - - gmx:100799074 1096.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01817 10 23888821 23900048 Pumo10g01817 10 23888821 23900048 ECH
Pumo6g00577 6 7327502 7334579 Pumo10g01817 10 23888821 23900048 PCT