Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00576 ATGGGACTCCAACCGAACCAAAAAAGCAAGCGAACCGAACACGATCAAAACGGCGTCGTCAATAGCAGGGAAGAACACGAAGAAGCATTGCTGGCTCTCGTCGAACACCGTGCCCGTGAAGTCAAAAACCTCCGTTACTACATCTCTTATTACTCCAACCAGCTTGAGGAAGCGGAAAAGAGGCTGCGAGAATCTAAATCCAAATTGGCTCTCCTCCGAGGTCAAACTAGTGCAAGTTCACCAGATGTTGAAACTAAACATGTGAAGATAGAAGAACATGGATCAAGATCAAAAAACGGTCCCATTGAAGAAAGTGATGCTTCTTCCAAAAAGCATAGTCAATCTAAGTCACACCTTGTTCATGTGAATTCAAAAATATCGCTGTCCATGCCGTTGCCACTTTATCCTTCTTTTGCTGGTTCAACAGCAAAGTCTGATAGGTCTCACGGATTTCATGAAAATTCTGAAATCAAGGACAGAGGGAGCAAAAGGAAGTTTGAACGGAAAGAACGTGAGGATTTGATCCCTTTAATATGCAAGAGTTCTTCACCAGGCTCAGTGGTCTGTCAAAGAAGCAGTCACTTCTCAAGCCAACACAGAAAGAAAGTGCGATGTATTTCCTTGTGTCCCGTGAATGATCAGCGTTTTGCCACCAGTGCTTTGGATGGAGTTGTCAACTTGTGGGAAGTTCATTCTTCCGGATCAGTAGCTTCTATGCTTAGAACAACTGACTGTGCATCCCCAAAGCAGAGGAGATGGCCAGAAGATATAGCTTGGCACCCAGAGGGAAACAGGCTGTTTTCAGTGTATAGTGCTGATAGTCAAGACTCTCAAATATCAGTTACAGATTTGAGTAGAGTGCAAGGAGGAGGGAGAGCACGTGTGAATTTCTTAGAGGACAAGCCTCATGTTAAGGGTGTTATAAATAGCATTGTTTTCCTGCCCTGGGAAAATACCAGTTTTGTAACTGGAGGAACTGACCATGCTGTCATACTGTGGAGTGAGAATAGTGAAAACAAATGGAAGCCCCAATTATTGCATAGTGATCTTCATTCTTCTGCCGTCATGGGAGTAGCTGGTATGCAGCAGAAGCAAATTGTGTTGTCCGCTGGTAAAGACAAGAGAATTTTGGGGTACGATGCTCATGTTGGAAGACAAGATTTCAAGCAGCAAGTTGATAGTAAATGTTTGAGTGTCCTGCCAAATCCGTGTGACTTCAATTTATTCATGGTTCAAACAAGCACCCATGAGAGGCAGCTTCGATTATTTGATATTAGATCAAAAGGAACAGAACTTCATGCCTTTGGATGGAAGCAAGAAAGCAGTGAATCTCAGTCAGCTCTGATAAATCAGGCTTGGTCCCCCAATGGACTGTATATAACATCCGGTTCAGCTGACCCCATGATTCACATATTTGATATCAGATATAATGGTCACAAGCCTTCCCAATCTATAAAAGCTCACCAGAAACGAGTCTTCAGAGCCATGTGGCTTCGGTCTGTTCCCCTCCTCATTTCCATGTCATCTGATCTCAACATTGGGTTACACAAGGTTGTGTAG 1560 0.4359 MGLQPNQKSKRTEHDQNGVVNSREEHEEALLALVEHRAREVKNLRYYISYYSNQLEEAEKRLRESKSKLALLRGQTSASSPDVETKHVKIEEHGSRSKNGPIEESDASSKKHSQSKSHLVHVNSKISLSMPLPLYPSFAGSTAKSDRSHGFHENSEIKDRGSKRKFERKEREDLIPLICKSSSPGSVVCQRSSHFSSQHRKKVRCISLCPVNDQRFATSALDGVVNLWEVHSSGSVASMLRTTDCASPKQRRWPEDIAWHPEGNRLFSVYSADSQDSQISVTDLSRVQGGGRARVNFLEDKPHVKGVINSIVFLPWENTSFVTGGTDHAVILWSENSENKWKPQLLHSDLHSSAVMGVAGMQQKQIVLSAGKDKRILGYDAHVGRQDFKQQVDSKCLSVLPNPCDFNLFMVQTSTHERQLRLFDIRSKGTELHAFGWKQESSESQSALINQAWSPNGLYITSGSADPMIHIFDIRYNGHKPSQSIKAHQKRVFRAMWLRSVPLLISMSSDLNIGLHKVV 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00576 519 Coils Coil 48 75 - -
Pumo6g00576 519 ProSiteProfiles Trp-Asp (WD) repeats profile. 196 238 IPR001680 GO:0005515
Pumo6g00576 519 SUPERFAMILY WD40 repeat-like 197 515 IPR036322 GO:0005515
Pumo6g00576 519 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 8 518 - -
Pumo6g00576 519 MobiDBLite consensus disorder prediction 146 168 - -
Pumo6g00576 519 MobiDBLite consensus disorder prediction 8 23 - -
Pumo6g00576 519 MobiDBLite consensus disorder prediction 84 113 - -
Pumo6g00576 519 MobiDBLite consensus disorder prediction 71 119 - -
Pumo6g00576 519 MobiDBLite consensus disorder prediction 141 168 - -
Pumo6g00576 519 Pfam WD domain, G-beta repeat 450 473 IPR001680 GO:0005515
Pumo6g00576 519 Gene3D - 181 337 IPR015943 GO:0005515
Pumo6g00576 519 Gene3D - 338 518 IPR015943 GO:0005515
Pumo6g00576 519 MobiDBLite consensus disorder prediction 1 23 - -
Pumo6g00576 519 SMART WD40_4 190 229 IPR001680 GO:0005515
Pumo6g00576 519 SMART WD40_4 342 380 IPR001680 GO:0005515
Pumo6g00576 519 SMART WD40_4 291 334 IPR001680 GO:0005515
Pumo6g00576 519 SMART WD40_4 478 517 IPR001680 GO:0005515
Pumo6g00576 519 SMART WD40_4 428 473 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00576 Pumo-Chr6 7314876 7319070 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00576 - - ccaj:109813667 747.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00576 6 7314876 7319070 Pumo10g01822 10 23921333 23926771 PCT