Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo10g01822 ATGGAGCCAAACGAAGAGAACGGAGGCAGCACGAGCAGGGAGGAACAGGAAGAGGCATTGGTGGCTTTGATCGAACACCGAACCCACGAAGTCAAAAACCTCCGTCACCGCATCGCTTATTATAAAACCCAGCTTGATGAAGCGGAGAAAAGGTTGCAAGATTCTGAATACAAATTGGCTCGCCTTCGGGGTCAAACAGTGTCATCTAGAAGTACCTTAGATAATGGAATCAAAACTGTGAAGACAGAGTGCAGATCAAACAGTCCCGTTGATAGAATTGAAGGTTCTACCAAAAGCCGAAATCAATCTAAACCAGAACTTCTTATTCCTTCAGTGAATCCAAAAATTTCACAACCTGCATTGTTGCCAAAGTCTTCTTCAAAAGCTTCAATAACTTCCAGTTCTGAAGCCACTCCTGGAGTCCATATCACAGGTGGTAGCTCTAGGGGGAAATCTGACAAGTCTCTTAGTCTTAGACTTTCTTCTGAGCAGCAAAAAACTGAAATCAAGGACAAAGGGACAAAAAGGAAATTTGAACAAAAAGAACACAAGGAATTGATTCCTTTAATACGCAAGAGTTCTTCACCAAGCTTGGTACACTCTCAAACAAGCAATCACATCTCAAGTCAACACAAGAGGAAATTGCGGAGTATTGCTTTGTGTCCTGTGAATGATCAGCTTTTTGTGACCAGTGCTCTGGATGGAGTGGTCAATTTGTGGCAAGTTCAGGCTAAGGGAGCAGGAGCCTCTCGTCTTAGCACTACTGATTGTGCATCCCAAAAGCAGAGGAGATGGCCAGAAGATTTAACTTGGCACCCAGAGGGAGACAGCTTATTTTCAGTATACAGCGCTGATGGCGGAGATTCTCAAGTATCGATTACAAATCTGAATAAAGGACAAGGGGGAGAACGTGTAAAATTCTTAGAGGACAAGCCTCATGTTAAGGGAATTATCAATGGCATTGTTTTTATGCCCTGGGAAAATACATGTTTTGTAACTGGTGGAAGTGACCATGCTGTTATACTTTGGAGTGAGCAGGATGAGAAGTGGAAGCCAAAGGCATTGCACAGGAATCTTCACTCATCTGCTGTAATGGGAGTTGCTGGTATGCAGCAGAAGCAGATTGTGTTGTCTGTTGGTGCAGACAGGAGAATATTTGGGTATGATGTACGTGCAGGAAGAGCAGATTTCAAGCATCAGGTTGATAGTAAATGCATGAGTGTCTTGCCCAATCCATGCGACTTCAATTTATTCATGGTTCAAACAGGGACCCATGAGAGGCAGCTTCGGTTGTTTGATATCAGATTGAGGAATACAGAACTTCATGCTTTTGGATGGAAGCAAGAAAGCAGTGATTCTCAATCGGCTCTGATAAATCAGGCTTGGTCTCCTGATGGACTTTATATAACATCTGGTTCTGCAGATCCTGTGATTCACATATTTGATATAAGGTATACTGCTCACAAGCCTTCCCAATCTATAAGAGCACATCAGAAACGAGTCTTCAGAGCCATGTGGCTTCAGTCTATTCCTCTTGTCATTTCCATATCATCTGATCTCAACATTGGACTGCACAAGGTTTACTCTTGA 1590 0.4302 MEPNEENGGSTSREEQEEALVALIEHRTHEVKNLRHRIAYYKTQLDEAEKRLQDSEYKLARLRGQTVSSRSTLDNGIKTVKTECRSNSPVDRIEGSTKSRNQSKPELLIPSVNPKISQPALLPKSSSKASITSSSEATPGVHITGGSSRGKSDKSLSLRLSSEQQKTEIKDKGTKRKFEQKEHKELIPLIRKSSSPSLVHSQTSNHISSQHKRKLRSIALCPVNDQLFVTSALDGVVNLWQVQAKGAGASRLSTTDCASQKQRRWPEDLTWHPEGDSLFSVYSADGGDSQVSITNLNKGQGGERVKFLEDKPHVKGIINGIVFMPWENTCFVTGGSDHAVILWSEQDEKWKPKALHRNLHSSAVMGVAGMQQKQIVLSVGADRRIFGYDVRAGRADFKHQVDSKCMSVLPNPCDFNLFMVQTGTHERQLRLFDIRLRNTELHAFGWKQESSDSQSALINQAWSPDGLYITSGSADPVIHIFDIRYTAHKPSQSIRAHQKRVFRAMWLQSIPLVISISSDLNIGLHKVYS 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo10g01822 529 ProSiteProfiles Trp-Asp (WD) repeats profile. 208 243 IPR001680 GO:0005515
Pumo10g01822 529 Pfam WD domain, G-beta repeat 459 482 IPR001680 GO:0005515
Pumo10g01822 529 Gene3D - 412 529 IPR015943 GO:0005515
Pumo10g01822 529 PANTHER TRANSDUCIN FAMILY PROTEIN / WD-40 REPEAT FAMILY PROTEIN 5 527 - -
Pumo10g01822 529 MobiDBLite consensus disorder prediction 148 163 - -
Pumo10g01822 529 SUPERFAMILY WD40 repeat-like 213 526 IPR036322 GO:0005515
Pumo10g01822 529 Coils Coil 31 65 - -
Pumo10g01822 529 MobiDBLite consensus disorder prediction 65 108 - -
Pumo10g01822 529 Gene3D - 96 411 IPR015943 GO:0005515
Pumo10g01822 529 MobiDBLite consensus disorder prediction 118 142 - -
Pumo10g01822 529 MobiDBLite consensus disorder prediction 65 186 - -
Pumo10g01822 529 SMART WD40_4 201 241 IPR001680 GO:0005515
Pumo10g01822 529 SMART WD40_4 445 482 IPR001680 GO:0005515
Pumo10g01822 529 SMART WD40_4 301 344 IPR001680 GO:0005515
Pumo10g01822 529 SMART WD40_4 487 526 IPR001680 GO:0005515
Pumo10g01822 529 SMART WD40_4 349 389 IPR001680 GO:0005515
Pumo10g01822 529 MobiDBLite consensus disorder prediction 164 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo10g01822 Pumo-Chr10 23921333 23926771 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo10g01822 - - gmx:100799587 976.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo10g01822 10 23921333 23926771 Pumo10g01822 10 23921333 23926771 ECH
Pumo6g00576 6 7314876 7319070 Pumo10g01822 10 23921333 23926771 PCT