Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00539 ATGGGCGAGGAAGAGAAAAAACCAGAGGAAAGCAAAGTGGAGGAGAAAAAAGCAGAGGAACCAAAGAAGGAAGAAGAAGCGAAAAAACCGGACGAGGAGAAAAAACCGGAAGAATCAAAAGATGACAAGGAATCCAAGGAGGAAGCTGCGCCGCCAGAAATCGTGCTTAAAGTGTTCATGCATTGCGAAGGTTGTGCTCGCAAGGTTCGTCGCTCCCTCAAAGGATTCCCAGGGGTCGAAGATATACTCACAGATTGCAAGTCTCACAAGGTGGTGGTGAAAGGAGAAAAAGCGGATCCGCTGAAGGTCCTAGAGAGAGTACAGAGGAAAAGCCATAGAAAGGTTGAACTTCTCTCTCCGATCCCAAAACCACCCGCGGAAGAGGAGAAAAAACCGGAAGAGGAAGAGAAACCCAAACCAGAGGAGAAGAAAGAAGAGCCTCAGGTCATCACAGTTGTTCTGAAAGTTCACATGCATTGCGAAGCTTGCGCCCAGGAAATCAAGAGACTCATCGAGAAAATGAAAGGGGTGGAATCAGCGGAAGCGGATCTGAAGAAGTCGGAGGTGAGCGTGAAGGGGGTGTTCGAGGTAGCGAAGTTGGTGGAGCACGTGTACAAGAGGACAGGGAAGCATGCAGTGATAGTGAAGCAAGAGCCAGAGAAGAAGGAAGAAGAAGAAGCAAAAGAAGAGAAGAAAGCAAAGGAAGGTGAGAAGAAGGAGAAAGGGACTGGTGAGGGAGAGGAAAACAAGGAGAAAAATAAACAAGCAGCAGAGGGTGAAGCCACAGCAGAAGAAAGCACGGTGGTGGAGCTGAAAAAAAGTGAGTATTATTACAATTACAACCCACCACCAAGGTATGGTGGCATGGAGATCTATGCATACCCTGAACCAGCATACCCGCCTCAGATCTTCAGCGATGAGAACCCCAATGCCTGCTCTGTCATGTAA 948 0.4821 MGEEEKKPEESKVEEKKAEEPKKEEEAKKPDEEKKPEESKDDKESKEEAAPPEIVLKVFMHCEGCARKVRRSLKGFPGVEDILTDCKSHKVVVKGEKADPLKVLERVQRKSHRKVELLSPIPKPPAEEEKKPEEEEKPKPEEKKEEPQVITVVLKVHMHCEACAQEIKRLIEKMKGVESAEADLKKSEVSVKGVFEVAKLVEHVYKRTGKHAVIVKQEPEKKEEEEAKEEKKAKEGEKKEKGTGEGEENKEKNKQAAEGEATAEESTVVELKKSEYYYNYNPPPRYGGMEIYAYPEPAYPPQIFSDENPNACSVM 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00539 315 MobiDBLite consensus disorder prediction 113 146 - -
Pumo6g00539 315 CDD HMA 153 212 IPR006121 GO:0046872
Pumo6g00539 315 Gene3D - 146 215 - -
Pumo6g00539 315 SUPERFAMILY HMA, heavy metal-associated domain 147 218 IPR036163 GO:0046872
Pumo6g00539 315 Coils Coil 220 241 - -
Pumo6g00539 315 MobiDBLite consensus disorder prediction 1 54 - -
Pumo6g00539 315 Gene3D - 51 123 - -
Pumo6g00539 315 MobiDBLite consensus disorder prediction 216 268 - -
Pumo6g00539 315 Pfam Heavy-metal-associated domain 154 210 IPR006121 GO:0046872
Pumo6g00539 315 Pfam Heavy-metal-associated domain 56 110 IPR006121 GO:0046872
Pumo6g00539 315 MobiDBLite consensus disorder prediction 1 51 - -
Pumo6g00539 315 PANTHER HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 7 34 315 IPR044577 GO:0046872
Pumo6g00539 315 ProSiteProfiles Heavy-metal-associated domain profile. 51 115 IPR006121 GO:0046872
Pumo6g00539 315 ProSiteProfiles Heavy-metal-associated domain profile. 149 213 IPR006121 GO:0046872
Pumo6g00539 315 Coils Coil 160 180 - -
Pumo6g00539 315 CDD HMA 60 116 IPR006121 GO:0046872
Pumo6g00539 315 SUPERFAMILY HMA, heavy metal-associated domain 55 110 IPR036163 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00539 Pumo-Chr6 6707872 6709979 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00539 - - gmx:100808454 358.221
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo6g00539 6 6707872 6709979 Pumo6g00539 6 6707872 6709979 ECH
Pumo6g00539 6 6707872 6709979 Pumo10g01861 10 24591430 24593241 PCT