Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo6g00531 | ATGTCGAGTCACGGTGGTTCTTCTCTAAGGAGCGGTTCCTTGTCGAATAGCCCCTCGCGGGCCAAGAAGAAAGCCTCTGGCTCTGAGCATTCAACGCCTGACTTTACTGCTCGTAAAACGTTTCCCTCACCGCGCACCATGGGAGAACGAACTGTGAAATCATTGCGGCTTTCAAAGGCATTGACAGTTCCTGAATCAACAACCGTCTATGAAGCTTGCCGTAGGATGGCTGCTCGCAAAGTAGATGCTCTATTACTAACTGATTCTAATGCTTTGCTCTGTGGAATCCTCACAGACAAGGATATAGCAACAAGAGTTATTGCTCGTGAGGTTAATCTCGAAGAAACACCTGTTTCCAAGGTTATGACAAGGAATCCAGTATTTGTCCTTTCTGACACTCTTGCTGTGGAAGCTCTCCAAAAGATGGTACAAGGTTGGTTCAGACATTTACCTGTGGTGGAGAATGGAGAAGTTGTTGCCATACTTGACATAGCAAAGTGTTTGTATGATGCCATTGCCCGTATGGAAAGGGCAGCAGAGAAAGGAAAGGCAATTGCGGCAGCAGTTGAAGGTATCGAAAAACACTGGGGAACTTCTACTCCTGGCTCCAATTCGACATTCATGGAGACTCTTCGTGAGCAGATATTTAAGCCATCTTTGTCTACAATTATTCCTGAGAATTCAAAGGTTGTAACAGTTTCACCAACAGACTCAGTTTTGACGACAACAAAGAAGATGCTTGAACTCTGTGCAAGTTCAGCTGTTGTGACGGTTGATGACAAACCTTGTGGTATTCTTACTTCAAAGGATATCTTGATGCGGGTAATAGCACAGAATCTTCCTCCATCATCAACTCTTGTTGAGAAGGTCATGACTCCAAATCCAGAATGTGCAATAATTGATACACCAATAGTCGATGCACTTCACACTATGCATGATGGAAAGTTTTTGCATCTTCCCGTGGTTAATAGAGATGGCATTGTTGTTGCTACGGTTGATGTGATTCATATAACTCACGCGGCTGTGGCGACAGCTAGTCAAGTCGGAAATACTCCCAATTTTAACAATGAAGCTGCCAGCTCCATGATACAAAAATTTTGGGATTCGGCTATGGCCTTAGCTCCAAATGAGGAGGACGAGGATTCACAAAGCGAGACTTCCTTGAAAATGATTTCTGAGGGAGGAGAAACAGGGAGATCCGTTTCTTATCTTGGGTCAAGCATGCAGAACACATTTTCCTTCAAATTACAAGACAGGAAGGGCAGATTGCATAGGTTCACATGCGATACTCGGAGCTTGGCAGAGGTTATAACATCAATCATTCAGAGAGTCGGTGATGATATTGACCCAGATAACCTGCCCCAAATTTTGTATGAAGATGAAGAAAATGATAAAGTTGTACTGGCTTCGGACAGTGATCTTGCTGCAGCTGTGGACCACGCGAAGACGGCTGGTTTGAAGGGATTGAGATTGCATTTAGACTACTCTGGAACACATGGTTATGGAAGTGATTCAAGTTCAGTAAGTTGGAAATATGCTAATTCAGAAATATGGGCATCGGCATACAGCGCCATTGCTGCTGGAGCTGCAGTTGTTGCTGCCTTAGGTCTATTGGCGTTTGTGAGGCGAAGTCAATGA | 1638 | 0.4432 | MSSHGGSSLRSGSLSNSPSRAKKKASGSEHSTPDFTARKTFPSPRTMGERTVKSLRLSKALTVPESTTVYEACRRMAARKVDALLLTDSNALLCGILTDKDIATRVIAREVNLEETPVSKVMTRNPVFVLSDTLAVEALQKMVQGWFRHLPVVENGEVVAILDIAKCLYDAIARMERAAEKGKAIAAAVEGIEKHWGTSTPGSNSTFMETLREQIFKPSLSTIIPENSKVVTVSPTDSVLTTTKKMLELCASSAVVTVDDKPCGILTSKDILMRVIAQNLPPSSTLVEKVMTPNPECAIIDTPIVDALHTMHDGKFLHLPVVNRDGIVVATVDVIHITHAAVATASQVGNTPNFNNEAASSMIQKFWDSAMALAPNEEDEDSQSETSLKMISEGGETGRSVSYLGSSMQNTFSFKLQDRKGRLHRFTCDTRSLAEVITSIIQRVGDDIDPDNLPQILYEDEENDKVVLASDSDLAAAVDHAKTAGLKGLRLHLDYSGTHGYGSDSSSVSWKYANSEIWASAYSAIAAGAAVVAALGLLAFVRRSQ | 545 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo6g00531 | 545 | ProSiteProfiles | PB1 domain profile. | 409 | 496 | IPR000270 | GO:0005515 | |
| Pumo6g00531 | 545 | SMART | cbs_1 | 229 | 276 | IPR000644 | - | |
| Pumo6g00531 | 545 | SMART | cbs_1 | 294 | 342 | IPR000644 | - | |
| Pumo6g00531 | 545 | SMART | cbs_1 | 59 | 107 | IPR000644 | - | |
| Pumo6g00531 | 545 | SMART | cbs_1 | 125 | 169 | IPR000644 | - | |
| Pumo6g00531 | 545 | CDD | CBS_pair_MUG70_2 | 227 | 343 | - | - | |
| Pumo6g00531 | 545 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Pumo6g00531 | 545 | ProSiteProfiles | CBS domain profile. | 291 | 348 | IPR000644 | - | |
| Pumo6g00531 | 545 | SMART | PB1_new | 411 | 496 | IPR000270 | GO:0005515 | |
| Pumo6g00531 | 545 | ProSiteProfiles | CBS domain profile. | 122 | 180 | IPR000644 | - | |
| Pumo6g00531 | 545 | PANTHER | AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT | 29 | 482 | - | - | |
| Pumo6g00531 | 545 | CDD | CBS_pair_MUG70_1 | 57 | 173 | - | - | |
| Pumo6g00531 | 545 | MobiDBLite | consensus disorder prediction | 1 | 51 | - | - | |
| Pumo6g00531 | 545 | ProSiteProfiles | CBS domain profile. | 56 | 115 | IPR000644 | - | |
| Pumo6g00531 | 545 | SUPERFAMILY | CBS-domain pair | 228 | 341 | IPR046342 | - | |
| Pumo6g00531 | 545 | Gene3D | - | 216 | 356 | IPR046342 | - | |
| Pumo6g00531 | 545 | ProSiteProfiles | CBS domain profile. | 223 | 283 | IPR000644 | - | |
| Pumo6g00531 | 545 | Pfam | PB1 domain | 411 | 494 | IPR000270 | GO:0005515 | |
| Pumo6g00531 | 545 | SUPERFAMILY | CAD & PB1 domains | 403 | 499 | - | - | |
| Pumo6g00531 | 545 | Pfam | CBS domain | 287 | 338 | IPR000644 | - | |
| Pumo6g00531 | 545 | Pfam | CBS domain | 118 | 162 | IPR000644 | - | |
| Pumo6g00531 | 545 | Pfam | CBS domain | 227 | 273 | IPR000644 | - | |
| Pumo6g00531 | 545 | Pfam | CBS domain | 58 | 104 | IPR000644 | - | |
| Pumo6g00531 | 545 | SUPERFAMILY | CBS-domain pair | 49 | 165 | IPR046342 | - | |
| Pumo6g00531 | 545 | Gene3D | - | 30 | 187 | IPR046342 | - | |
| Pumo6g00531 | 545 | CDD | PB1_MUG70 | 412 | 496 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pumo6g00531 | Pumo-Chr6 | 6642388 | 6648092 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo6g00531 | - | - | gmx:100783514 | 945.266 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Pumo6g00531 | 6 | 6642388 | 6648092 | Pumo6g00531 | 6 | 6642388 | 6648092 | ECH | |
| Pumo10g01866 | 10 | 24674269 | 24680615 | Pumo6g00531 | 6 | 6642388 | 6648092 | PCT |