Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00454 ATGAATGGTGTTCCGAGACACGAGCGCCGATGGGCGTCCGACACCGTTCCGGGAAAAGCGACCGTCAGCGCCGGAACTTCGCCGGGAACCGAGTCCAACTCCGCCACCGAGGAGTTCGTAGAAGTAACTCTCGATCTTCAAGACGATGACACCATCGTTCTCCGGAGCGTCGAGCCAGCCTCCGTCATTAACATAGACGACAGCGTCGCCGGCAGCGGAAATCAAACTCCGGTGTCGGTTTCGAGGTCTCCGACGATCCGTCGGAGCTCGTCGAGAGGATTCCGGCAGTTCTCGCAGGAGCTGAAAGCCGAGGCGGTTGCGAAGGCTAGGCAGTTCTCGCAGGAGCTGCGGAGGTTCTCGTGGAGCCACGGCCACGCTTCGCGCGCGTTCTCATCTTCCTCGGCTCAGAACGGCGCCGGCGCCGGATTTGAAACGGCGTTGGCGGCTCGCGCTCTCAGGAAGCAACGCGCTCAGCTTGATCGCACGCGCTCCGGCGCGCACAAAGCGCTTCGCGGTCTGAAATTTATCAGCAGAAAATCCAATGGCGTTGATGCGTGGAACGAGGTGCAGAGCAACTTCGATAGGCTCGCTAAGGACGGTTTTCTCAATCGCACCGATTTCGCTCAATGCATAGGAATGAAGGATTCGAAGGAATTCGCTCTGGAACTGTTCGATGCTCTGAGTCGTAAACGAAGGTTGAGAGCTGACAAGATCAGCAGGGAAGAACTGTTCGAATTCTGGTCGCAAATTACCGATCAAAGTTTTGATTCGCGGCTCCAGATCTTCTTCGACATGGTGGACAAGAACGAGGATGGGAGAATCGCCGAAGAAGAAGTGAAAGAGATCATCATGTTAAGCGCTTCTGCAAATAGGTTGTCCAGATTAAAGGAACAGGCCGAAGAATATGCAGCTCTAATCATGGAAGAGTTGGACCCCGAAGGACTTGGCTACATCGAGCTATGGCAGTTGGAGACGCTTCTTTTACAAAAAGACACGTACCTCAACTACAGCCAAGCTCTAAGCTACACAAGCCAAGCTTTGAGCCAGAACCTACAGGGGCTGAGGAAGAAAAGTCCTATACGTAGAATGAGCCGCAGATTGGTCTACTATTTGCAAGAGAATTGGAGGAGACTTTGGGTTTTGACACTGTGGGTGGGCATAATGATTGGGCTGTTCACGTGGAAGTTTATTCAGTACAAGCAGAAAGATGCATTTCAGATCATGGGTTACTGTCTTCTCGCGGCTAAAGGTGCGGCTGAGACTCTAAAGTTCAACATGGCACTTATACTCTTGCCCGTGTGCAGAAACACCATAACTTGGCTCAGGTCGACCAAGCTGGGCTATGCTGTACCTTTTGATGACAACATCAACTTTCATAAGACAATTGCTGGGGCCATCGTGATTGGTATTATACTTCATGCCGGGGATCACCTTGCTTGTGATTTTCCAAGACTTGTAAGTACGTCTGAAGGACGTTATGAAAAGTATTTGAAAGGTGTATTTGGTGATCATAAACCCAGTTATGTAGCCCTAGTTAAAGGCATCGAGGGTGTGACTGGAGTTTTGATGGTGGTTCTTATGATAATAGCATTTACACTTGCTACCAAATGGTTCCGGAGAAATCTCATTAAGCTGCCTAAACCATTTAGTAGGCTCACTGGCTTCAATGCTTTCTGGTATTCACACCATCTGTTTGTCATTGTCTATGTCCTCCTCATCATCCACGGAATAAAACTTTACCTCGTGCATAAATGGTACCTTAAAACGACATGGATGTATCTTGCGGTTCCAGTTTTACTTTATGCGTCAGAGAGAATACTCAGATTATTTCGTTCTGGTTTGTATACAGTCCGTCTTGGAAAGGTTGCCATATATCCTGGAAATGTTCTCACATTGCAAATGTCTAAGCCTCCTCAATTTCGCTACAAGAGCGGACAATACATGTTTGTACAGTGTCCTGCTGTTTCTCCTTTTGAGTGGCATCCGTTCTCTATTACCTCAGCCCCTGGCGATGACTACCTGAGTGTTCACATTCGGCAACTGGGTGATTGGACACAGGAGCTTAAAAGGGTGTTCTCTGAGGCTTGTGAGCCTCCTGTGTCTGGGAAGAGTGGGCTTCTCAGGGCTGATGAAACGACTAAGAAAAGTTTGCCGAAGTTAAAGATAGATGGACCTTACGGTGCGCCAGCACAAGATTATAAAAAATATGATGTTTTGTTACTTGTCGGTCTTGGGATAGGAGCAACACCTTTCATCAGCATTCTAAAAGATCTTCTTAACAACATCATCAAAATGGAGGAAATGGCGGATTCAATCTCTGATATAAGTAGAGTTTCAGACCTTAGTGTTGGGAGTACTACTGATTCACCTTCTCTTGATAAAATTGCGCCAAAACGGAAGAAAACACTGAAGACAACCAACGCTTATTTCTACTGGGTTACAAGAGAGCAAGGCTCTTTTGATTGGTTCAAAGGAGTCATGAATGAAGTAGCAGAGCTTGATCAAAGGGGTGTCATTGAGATGCACAACTACTTGACTAGCGTATACGAGGAAGGGGATGCTAGATCCGCCCTCATCACCATGGTGCAAGCACTAAACCATGCCAAAAATGGAGTTGACATTGTTTCTGGGACTAGAGTGCGAACTCATTTTGCTAGGCCTAACTGGAAGAAGGTTTTCGCTAAAATGTGCTCCAAGCACTGTAATGGACGAATAGGGGTATTTTATTGTGGCGCACCAGTTTTGGCCAAAGAACTTAGCAAGCTCTGCTTCGAGTTCAATGAAAAGGGTCCAACAAAATTTGAGTTCCACAAGGAGCATTTCTAA 2826 0.4745 MNGVPRHERRWASDTVPGKATVSAGTSPGTESNSATEEFVEVTLDLQDDDTIVLRSVEPASVINIDDSVAGSGNQTPVSVSRSPTIRRSSSRGFRQFSQELKAEAVAKARQFSQELRRFSWSHGHASRAFSSSSAQNGAGAGFETALAARALRKQRAQLDRTRSGAHKALRGLKFISRKSNGVDAWNEVQSNFDRLAKDGFLNRTDFAQCIGMKDSKEFALELFDALSRKRRLRADKISREELFEFWSQITDQSFDSRLQIFFDMVDKNEDGRIAEEEVKEIIMLSASANRLSRLKEQAEEYAALIMEELDPEGLGYIELWQLETLLLQKDTYLNYSQALSYTSQALSQNLQGLRKKSPIRRMSRRLVYYLQENWRRLWVLTLWVGIMIGLFTWKFIQYKQKDAFQIMGYCLLAAKGAAETLKFNMALILLPVCRNTITWLRSTKLGYAVPFDDNINFHKTIAGAIVIGIILHAGDHLACDFPRLVSTSEGRYEKYLKGVFGDHKPSYVALVKGIEGVTGVLMVVLMIIAFTLATKWFRRNLIKLPKPFSRLTGFNAFWYSHHLFVIVYVLLIIHGIKLYLVHKWYLKTTWMYLAVPVLLYASERILRLFRSGLYTVRLGKVAIYPGNVLTLQMSKPPQFRYKSGQYMFVQCPAVSPFEWHPFSITSAPGDDYLSVHIRQLGDWTQELKRVFSEACEPPVSGKSGLLRADETTKKSLPKLKIDGPYGAPAQDYKKYDVLLLVGLGIGATPFISILKDLLNNIIKMEEMADSISDISRVSDLSVGSTTDSPSLDKIAPKRKKTLKTTNAYFYWVTREQGSFDWFKGVMNEVAELDQRGVIEMHNYLTSVYEEGDARSALITMVQALNHAKNGVDIVSGTRVRTHFARPNWKKVFAKMCSKHCNGRIGVFYCGAPVLAKELSKLCFEFNEKGPTKFEFHKEHF 941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00454 941 SUPERFAMILY EF-hand 186 336 IPR011992 -
Pumo6g00454 941 Pfam FAD-binding domain 616 729 IPR013112 GO:0016491
Pumo6g00454 941 Pfam Ferric reductase NAD binding domain 736 923 IPR013121 GO:0016491
Pumo6g00454 941 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 612 732 IPR017927 GO:0016491
Pumo6g00454 941 SUPERFAMILY Riboflavin synthase domain-like 615 728 IPR017938 -
Pumo6g00454 941 Gene3D - 159 275 - -
Pumo6g00454 941 PANTHER NADPH OXIDASE 219 941 - -
Pumo6g00454 941 FunFam Respiratory burst oxidase homolog A 603 695 - -
Pumo6g00454 941 Gene3D Translation factors 604 695 - -
Pumo6g00454 941 ProSiteProfiles EF-hand calcium-binding domain profile. 254 289 IPR002048 GO:0005509
Pumo6g00454 941 Coils Coil 285 305 - -
Pumo6g00454 941 FunFam Respiratory burst oxidase protein A 727 941 - -
Pumo6g00454 941 Pfam Respiratory burst NADPH oxidase 158 257 IPR013623 GO:0004601|GO:0050664
Pumo6g00454 941 FunFam Respiratory burst oxidase homolog A 159 275 - -
Pumo6g00454 941 ProSitePatterns EF-hand calcium-binding domain. 267 279 IPR018247 -
Pumo6g00454 941 MobiDBLite consensus disorder prediction 19 36 - -
Pumo6g00454 941 CDD NOX_Duox_like_FAD_NADP 621 883 - -
Pumo6g00454 941 MobiDBLite consensus disorder prediction 68 92 - -
Pumo6g00454 941 MobiDBLite consensus disorder prediction 1 36 - -
Pumo6g00454 941 SFLD NADPH oxidase subgroup (NOX) 104 941 - -
Pumo6g00454 941 CDD EFh 218 284 IPR002048 GO:0005509
Pumo6g00454 941 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 733 941 IPR039261 -
Pumo6g00454 941 Gene3D - 727 941 IPR039261 -
Pumo6g00454 941 PRINTS Cytochrome B-245 heavy chain signature 741 758 IPR000778 GO:0016020|GO:0016491
Pumo6g00454 941 PRINTS Cytochrome B-245 heavy chain signature 718 731 IPR000778 GO:0016020|GO:0016491
Pumo6g00454 941 PRINTS Cytochrome B-245 heavy chain signature 518 541 IPR000778 GO:0016020|GO:0016491
Pumo6g00454 941 Pfam Ferric reductase like transmembrane component 417 573 IPR013130 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00454 Pumo-Chr6 5638713 5646935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00454 9 941 Miscellaneous Gene Families AT1G64060 78.875 0.0 1541
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00454 K13447 - gmx:100801077 1812.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g02363 8 60846605 60855064 Pumo6g00454 6 5638713 5646935 PCT