Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo6g00402 ATGTCAATTGCTTTGAGTTCAGTTTGCAACGAGAAGGTACATTGGGAAGGGCAACCAGGACATTGCTCTGGTGAGCCAATATTGATTTACCTCACTGTGGATGGTGCTGTGACCCCAATGCGGGTGTTGGAGTCCGATTCCATTGCTTCGGTGAAACTGAGGATTCAGCAGTGCAAAGGCTTCGTGGTGAAGAATCAGAAGCTGGTTTTTGGTGGCAGAGAGCTAGCTCGCAATGGCACACTCATCAAGGACTATGGTGTCACTGATGGCAATGTTCTTCACTTGGTTCTTCGCCTCTCTGATCTTCTCTTCATTGTCGTCAGGACCGTTTCTGGGAAGGAATTTGAGTTCCACATCGACAGGCACAGAAATGTGGGGTATCTGAAGCAACGCATTAGAAAGAAAGGGGAAGGTTTCATTGATCTTGAGGATGATGATCAAGAGCTTTTCTGCAATGATGAGAAGCTCGATGACCAGAGACTCTTCCATGACTTATGCAAGAGTGATGATGATGTGATCCATTTGATAATTAAGAAATCGGCTAAGGTTAGGACCACACTGATTCACAAGGATTTGAAGCTCTCGGTGGAGGCACCAGGTGTGAGAGTAAAACACAAAAGGGACAAACATGTTCAGATAGCAAAGGTGCCACCTGACGTAGCTTTCTGGTTGGAGCCAATTATTGTGAATCCTAAGATCAATTTTTTTCCTTTCCTTTGGGACATGATAAACTCCACATTTGAAGGTTTGAAGAAAGGAAATCACCCTATTAGGTCCTCTGATGGCACTGGAGGGACATACTTCATGCAAGATTCAACGGGTCAGGAGCATGTTTCGGTTTTCAAGCCCATAGATGAGGAACCAATGGCTGTGAACAACCCAAGAGGCCTTCCAAATTCATCTAATGGTGAAGGTTTGAAAAGAGGGACAAAGGTTGGAGAAGGAGCCTTGAGGGAAGTTGCGGCTTATTTATTGGATCATCCAAGGAGTGGACCGCGTTTGGTGTCGGGTGAAGCAGTGGGGTTTTCTGGTGTTCCCCCTACTGTTATGGTGCAGTGCTTGCACCAAGAATTTAACCACCCAAATGGGTTTGCTTGCTCCTCAAAGTATGTTAAGATCGGGTCACTGCAGAAGTTCATGAGTAATGATGGTAACTGTGAGGACTATGGACCCCGGGCTTTCCCAGTGGAGGAGGTGCATAAGATTACTGTGCTTGATATAAGATTGGCTAATGCAGACAGGCATGCTGGGAATATATTGATCAGAAAGGAGGCAGATGACCAGATAAAGCTCATTCCTATTGATCATGGCTATTGTCTACCAGATAAATTTGAAGATTGCACATTTGATTGGCTTTACTGGCCACAAGCACGCCAGCCTTACTCTCCTGAGACAATTGATTATATCAATTCTCTGGATGCTGAAAAAGACTTGGAACTTTTGAAAGGTTATGGATGGGATATTCCACTTCAGTGTGCTAGAACACTTCGCATTTCCACAATGTTGCTGAAGAAAGGGGTCGAGAGAGGCCTCACTCCTTATGCTATTGGAAGCATTATGTGTCGGGAAAATTTGAACAAGGAATCTGTGATTGAAGAGATTATTGGGGAAGCCCAAGATTCCTTGCTTCCTGGCATGGAGGAATCGGCATTTCTTGAAGCAATCTCCCAAATCATGGATTACCGCCTTGATAAGCTTGCAAAATAG 1707 0.4482 MSIALSSVCNEKVHWEGQPGHCSGEPILIYLTVDGAVTPMRVLESDSIASVKLRIQQCKGFVVKNQKLVFGGRELARNGTLIKDYGVTDGNVLHLVLRLSDLLFIVVRTVSGKEFEFHIDRHRNVGYLKQRIRKKGEGFIDLEDDDQELFCNDEKLDDQRLFHDLCKSDDDVIHLIIKKSAKVRTTLIHKDLKLSVEAPGVRVKHKRDKHVQIAKVPPDVAFWLEPIIVNPKINFFPFLWDMINSTFEGLKKGNHPIRSSDGTGGTYFMQDSTGQEHVSVFKPIDEEPMAVNNPRGLPNSSNGEGLKRGTKVGEGALREVAAYLLDHPRSGPRLVSGEAVGFSGVPPTVMVQCLHQEFNHPNGFACSSKYVKIGSLQKFMSNDGNCEDYGPRAFPVEEVHKITVLDIRLANADRHAGNILIRKEADDQIKLIPIDHGYCLPDKFEDCTFDWLYWPQARQPYSPETIDYINSLDAEKDLELLKGYGWDIPLQCARTLRISTMLLKKGVERGLTPYAIGSIMCRENLNKESVIEEIIGEAQDSLLPGMEESAFLEAISQIMDYRLDKLAK 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo6g00402 568 Gene3D - 31 101 - -
Pumo6g00402 568 FunFam Phosphatidylinositol 4-kinase gamma 4 24 103 - -
Pumo6g00402 568 ProSiteProfiles Ubiquitin domain profile. 29 98 IPR000626 GO:0005515
Pumo6g00402 568 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 253 550 IPR000403 -
Pumo6g00402 568 SUPERFAMILY Protein kinase-like (PK-like) 409 566 IPR011009 -
Pumo6g00402 568 SUPERFAMILY Ubiquitin-like 99 179 IPR029071 -
Pumo6g00402 568 SUPERFAMILY Ubiquitin-like 31 100 IPR029071 -
Pumo6g00402 568 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 37 541 IPR044571 -
Pumo6g00402 568 Pfam Ubiquitin family 105 179 IPR000626 GO:0005515
Pumo6g00402 568 Pfam Ubiquitin family 33 99 IPR000626 GO:0005515
Pumo6g00402 568 ProSiteProfiles Ubiquitin domain profile. 103 182 IPR000626 GO:0005515
Pumo6g00402 568 Pfam Phosphatidylinositol 3- and 4-kinase 262 515 IPR000403 -
Pumo6g00402 568 CDD Ubl_ubiquitin_like 105 176 - -
Pumo6g00402 568 Gene3D - 103 181 - -
Pumo6g00402 568 SMART ubq_7 27 98 IPR000626 GO:0005515
Pumo6g00402 568 SMART ubq_7 103 178 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo6g00402 Pumo-Chr6 5132396 5135606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo6g00402 2 567 Acyl Lipid Metabolism Gene Families AT5G24240 58.885 0.0 672
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo6g00402 - - gmx:100809172 1082.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo8g00861 8 33311938 33313863 Pumo6g00402 6 5132396 5135606 PCT