Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03908 ATGTCATCCGCCGGTGTCTCTACTCTTAGTATGGTTCCCACTGAGCCATTGTTGTCACCAAAGACATTCCCTTTTCCAACTCCATCACACTTGTCTTTGGAAGATAAATCCATTTTCATATACCTCTCCTTTTCGGGCTCATTGACTCCAATCCGTGTTATGGAGTGGGATACCATTGAATCTGTCAAATTCAAAATCCGAAGGTGTGAAAGCCTTCCATTTTTAACAAACAAGCAGAAGTTGGTTTATGCTGGCCGAGAGCTCGCACGAAGTGATTCGCTGCTCAAGGACTATGGAGTAACCGATGGAAATGTTTTGCATTTGATAATCAAACTGTCAGATCTTCAGGTCATCAATGTGAAAACTTCTTGTGGGAAGGAGTTCACGTTTCAGGTTGAACGAGGCAGGGATGTTGGGTACATAAAGCGGCGGATTGCCAAAAGGGAGAAACAGTTTGATGATCCTGAGGAGCAGGAGCTTGTGTGCAATGGGGAAAGGCTTGAGGACCAGAGGCTTATTGATGATATCTGCTGCAAACATAATGATGCAGTGGTACATCTGTTTGTGAGAAAAAAGCATGTTAAAGTTCAGAGGAGACCCCTTGAGTTGTCCATTATAGCAAAAGATTTGATTGATAAGAAAAAAAATGATGTCAGTGGAAATACTAATAGGGGAAGTTATGATGTTGGTAAAGAAGATACTATTAGGAAGTCTGATGTCATTCAAAGAGCTGTGCTGAAAAAGCCTCCCGATAGAGATTTTATTTTGGAGCCAGTTATTATTAACCCTAAAATTGAATTAGCTCCATCTATTTGGAATATGGTGAACTCTACATATGATGGACTTGACAGTGGAAAATATCCAATCAGATCTGCAGAGGGTACAGGAGGAGCTTACTTTATGCTTGATTCAGCGGGGCAAAAGTATGTGTCTGTTTTTAAGCCTATTGATGAAGAGCCAATGGCTGTGAATAACCCTCGAGGTCTTCCTTTGTCATTAGATGGCGAAGGCTTAAAAGAGGGTACAAGAGTTGGTCAAGGAGCATTCAGGGAAGTTGCAGCCTATGTTCTAGACCATCCATTGAGTGGGCGACGCACATTATTTGGTGATGAAAAAGGCTTTGCTGGTGTTCCCCCAACTTTGATGGTTAAGTGCTTGCATAAAGCATTCAACTATCCCAGAGAATTGACTCCTAAGATTGGCTCCTTGCAAATGTTCACAGAAAATAGTGGAAGTTGTGAAGATATGGGCCCAGGGGCTTTCCCAGTAAAGGAGGTACATAAAATTACTGTTTTGGACATAAGACTGGCAAATGCAGATAGGCATGCTGGGAATATTTTGATCAGCAAAGAGGAGGACAACAACCAGTCTGTTCTGATTCCAATTGATCATGGATACTGCTTGCCCACAAGCTTTGAAGATTGTACTTTTGAGTGGCTTTACTGGCCCCAAGCTCGCCAGCCATACTCCCCAGAAACTATTGACTACATAAAGTCACTGGATGCTGAAGAAGATATTGCCCTTTTAAAGTTTCATGGATGGGATCTGCCAGTTGAATGTGCCCGCACTCTTAGGATCTCAACCATGCTTTTGAAGAAAGGGGTAGAGAGAGGATTGACCCCCTTTGCCATTGGAAGCCTGATGTGCAGGGAATCCTTGAACAAAGAATCTGTGATTGAAGAAATAGTACAAGCAGCTCTGGATTCTGTTCTTCCTGGCACAAGTGAAGCTACATTGCTGGATGCGGTTTCCCAAATCATGGATCTGCGCCTTGATGAGATTGTCAGATCTCGTTTATAA 1800 0.4267 MSSAGVSTLSMVPTEPLLSPKTFPFPTPSHLSLEDKSIFIYLSFSGSLTPIRVMEWDTIESVKFKIRRCESLPFLTNKQKLVYAGRELARSDSLLKDYGVTDGNVLHLIIKLSDLQVINVKTSCGKEFTFQVERGRDVGYIKRRIAKREKQFDDPEEQELVCNGERLEDQRLIDDICCKHNDAVVHLFVRKKHVKVQRRPLELSIIAKDLIDKKKNDVSGNTNRGSYDVGKEDTIRKSDVIQRAVLKKPPDRDFILEPVIINPKIELAPSIWNMVNSTYDGLDSGKYPIRSAEGTGGAYFMLDSAGQKYVSVFKPIDEEPMAVNNPRGLPLSLDGEGLKEGTRVGQGAFREVAAYVLDHPLSGRRTLFGDEKGFAGVPPTLMVKCLHKAFNYPRELTPKIGSLQMFTENSGSCEDMGPGAFPVKEVHKITVLDIRLANADRHAGNILISKEEDNNQSVLIPIDHGYCLPTSFEDCTFEWLYWPQARQPYSPETIDYIKSLDAEEDIALLKFHGWDLPVECARTLRISTMLLKKGVERGLTPFAIGSLMCRESLNKESVIEEIVQAALDSVLPGTSEATLLDAVSQIMDLRLDEIVRSRL 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03908 599 SUPERFAMILY Protein kinase-like (PK-like) 435 594 IPR011009 -
Pumo5g03908 599 SUPERFAMILY Ubiquitin-like 43 113 IPR029071 -
Pumo5g03908 599 SUPERFAMILY Ubiquitin-like 109 192 IPR029071 -
Pumo5g03908 599 ProSiteProfiles Ubiquitin domain profile. 36 111 IPR000626 GO:0005515
Pumo5g03908 599 CDD Ubl_ubiquitin_like 118 188 - -
Pumo5g03908 599 Pfam Phosphatidylinositol 3- and 4-kinase 294 543 IPR000403 -
Pumo5g03908 599 ProSiteProfiles Ubiquitin domain profile. 118 175 IPR000626 GO:0005515
Pumo5g03908 599 Pfam Ubiquitin family 40 112 IPR000626 GO:0005515
Pumo5g03908 599 Pfam Ubiquitin family 118 191 IPR000626 GO:0005515
Pumo5g03908 599 Gene3D - 117 193 - -
Pumo5g03908 599 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 48 568 IPR044571 -
Pumo5g03908 599 Gene3D - 32 116 - -
Pumo5g03908 599 SMART ubq_7 38 111 IPR000626 GO:0005515
Pumo5g03908 599 SMART ubq_7 116 190 IPR000626 GO:0005515
Pumo5g03908 599 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 285 578 IPR000403 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03908 Pumo-Chr5 89151108 89153955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03908 35 593 Acyl Lipid Metabolism Gene Families AT5G24240 55.203 0.0 627
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03908 - - gmx:100791631 1155.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03908 5 89151108 89153955 Pumo7g00648 7 10642702 10645848 PCT