Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03705 ATGGATAACAAAACCACTGAACCAAGCGATTCTTCAACTCCTCTTCTCCCCACAAGTTATGGTGCCAATGATGGCGTTGACTTTCACGAAAAGAGCCACAACGGAGCTTCTTCCGTACCAACTACTCTTATACTCACCACCCTCGTCGCTGTTTTTGGTTCTTACGTTTTTGGCTCTGCTATTGGGTATTCATCACCTACTCAATCTGGAATCATGCGTGACCTCAATCTCGGAGTGGCCCAGTACTCAATTTTTGGTTCGATATTGACGATTGGAGCGATGATTGGTGCCGTTGTGAGTGGTAGAATAGCAGATTATGCAGGTCGTCGAGTTGCCATGGGATTCTCCCAGGTTTTCTGCATCTTGGGATGGCTTGCCATAACATTCTCAAAGGTTGCTTGGTGGCTTTATGCTGGAAGACTGTTGATAGGATGTGGGATTGGCCTTCTATCTTATACGGTACCTGTTTATGTAGCAGAAATAACACCCAAGAATCTTCGAGGGGCATTCACTGCAGTTCATCAGTTAATGATTTGTTGTGGGATGTCATTAACTTATCTTATTGGAGCTTATGTGAATTGGCGAATCTTGGCGGTAATAGGAATTATTCCGTGTCTTGTGCAGCTTCTGAGTCTTCCCTTCATCCCTGATTCTCCTAGGTGGCTGGCTAAGGTTGGTCGCTTGAAAGAGAGTGATTCTGCTTTACAGCGCCTCAGGGGGAAGAATGCTGATGTTTATCAAGAGGCCACCGAAATCAGAGATTATACAGAAGCCTTTCAGAAGCAAACAGAAGCTAGCATCATTGGCTTATTTCAAATGCAGTATTTGAAGTCACTTACCGTAGGAGTCGGCTTGATGATACTGCAACAGTTTGGAGGGATTAATGGCATTGTTTTTTATGCAAACTCTATATTTATCTCTTCTGGGTTTTCAGAAAGTATTGGAACAATAGCAATCGTTGCCGTTAAGATTCCAATGACAACTTTAGGAGTGCTTTTAATGGATAAATCTGGAAGACGACCACTTTTGCTGGTGTCTGCAGTGGGAACATGCATAGGATGCTTCCTGGCAGCCTTGTCATTCGTTTTGCAGGACTTGCATAAATGGAAAGGAGTTAGTCCCAGTTTTGGCGCTAGTGGGTGTACTGGTATACGTGGGATCTTACTCTATAGGCATGGGAGCAATTCCGTGGGTTATAATGTCTGA 1206 0.4403 MDNKTTEPSDSSTPLLPTSYGANDGVDFHEKSHNGASSVPTTLILTTLVAVFGSYVFGSAIGYSSPTQSGIMRDLNLGVAQYSIFGSILTIGAMIGAVVSGRIADYAGRRVAMGFSQVFCILGWLAITFSKVAWWLYAGRLLIGCGIGLLSYTVPVYVAEITPKNLRGAFTAVHQLMICCGMSLTYLIGAYVNWRILAVIGIIPCLVQLLSLPFIPDSPRWLAKVGRLKESDSALQRLRGKNADVYQEATEIRDYTEAFQKQTEASIIGLFQMQYLKSLTVGVGLMILQQFGGINGIVFYANSIFISSGFSESIGTIAIVAVKIPMTTLGVLLMDKSGRRPLLLVSAVGTCIGCFLAALSFVLQDLHKWKGVSPSFGASGCTGIRGILLYRHGSNSVGYNV 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03705 401 ProSitePatterns Sugar transport proteins signature 1. 100 116 IPR005829 GO:0016020|GO:0022857|GO:0055085
Pumo5g03705 401 FunFam facilitated trehalose transporter Tret1 40 377 - -
Pumo5g03705 401 PANTHER - 41 370 - -
Pumo5g03705 401 SUPERFAMILY MFS general substrate transporter 34 363 IPR036259 -
Pumo5g03705 401 Gene3D MFS general substrate transporter like domains 34 389 IPR036259 -
Pumo5g03705 401 ProSiteProfiles Major facilitator superfamily (MFS) profile. 46 401 IPR020846 GO:0022857
Pumo5g03705 401 Pfam Sugar (and other) transporter 47 372 IPR005828 GO:0016020|GO:0022857|GO:0055085
Pumo5g03705 401 CDD MFS_GLUT6_8_Class3_like 44 376 IPR044775 GO:0008643|GO:0051119
Pumo5g03705 401 PRINTS Sugar transporter signature 289 299 IPR003663 GO:0016020|GO:0022857|GO:0055085
Pumo5g03705 401 PRINTS Sugar transporter signature 54 64 IPR003663 GO:0016020|GO:0022857|GO:0055085
Pumo5g03705 401 PRINTS Sugar transporter signature 137 156 IPR003663 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03705 Pumo-Chr5 86695577 86699757 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03705 29 398 Organic Solute Cotransporters AT1G54730 62.432 6.97e-159 452
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03705 K03444 - gmx:100817150 666.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02713 5 73733015 73737784 Pumo5g03705 5 86695577 86699757 ECH
Pumo5g03705 5 86695577 86699757 Pumo5g03705 5 86695577 86699757 ECH