Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03700 ATGGACGGTACTAAAAGCACAGAACCAAGTGAATTTTCAAGTCCTCTGCTTCCCGCAGAAGCACAAGGGTATGGTGGCAACGATGATGTTGACTGTGAGGATAAGAGGCAGAAAGAAACTTGGTCGGTACCACCTATTCTTATACTTACCACCCTTGTTGCTGTCTCTGGTTCTTACGTTTTTGGGTCTGCTGTGGGATATTCATCTCCTGCTCAGACTGGAATCATGGATGATCTCAATCTTGGTGTGGCCGAGTATTCACTTTTTGGATCAATACTGACAATTGGAGCAATGATTGGTGCCATCATAAGTGGTAGAATAGCAGACTACGCAGGTCGACGAGCTGCTATGGGCTTCTCCGAAGTATTCTGCATCTTGGGATGGCTTGCCATAGCATTCTCAAAGGTTGGTTGGTGGCTTTATGTTGGAAGATTGTTGGTGGGATGTGGGATGGGCCTTCTATCCTATGTGGTACCCGTTTATATAGCTGAAATAACACCCAAGAATCTTCGAGGGGGATTCACCACAGTTCATCAGTTAATGATTTGTTGCGGGGTATCATTAACTTATCTTATTGGAGCATTCTTGAACTGGCGGATTTTGGCTATAATAGGAACTATTCCATGTCTTGTGCAACTTTTGGGTCTATTCTTCATTCCTGAGTCTCCTAGGTGGCTGGCAAAATTTGGTCAGTGGGAAAGGAGTGAATCTGTATTACAGCGCCTTAGAGGAAAGGATGCTGATGTTTCTCAAGAGGCCGCTGAAATTAGAGATTTTACAGAAGCCCTTCAGAGGGAAACAGAAGCTAGCATTATTGGCTTATTTCAATTGCAGTATTTGAAGTCACTTACTGTAGGAGTTGGTCTGATGATACTACAACAGTTTGGAGGGGTTAACGGCATTGCTTTTTATGCAAGTTCTATATTCATCTCTGCTGGGTTTTCGGGAAGTATTGGAATGATAGCAATGGTTGCTGTTCAGATCCCAATGACAGCTTTGGGAGTACTTTTGATGGATAAATCTGGGAGACGACCACTTCTGCTGATCTCTGCATCGGGAACATGCTTAGGATGCTTCCTTGCAGCCCTATCATTCTTCTTACAGGACCTGCATAAATGGAAGGAAGTCAGTCCCATTCTGGCACTTGTTGGTGTTCTGGTATATACAGGATCATTCTCGCTTGGCATGGGGGGAATCCCCTGGGTTATAATGTCTGAGATATTTCCCATTAATGTGAAGGGCTCTGCTGGAAGTCTTGTGACTTTGGTTAGCTGGTTGTGTTCTTGGATTGTATCATACGCTTTTAACTTCCTCATGAGTTGGAGTTCATCAGGAACTTTCTTCATATTCTCTAGCGTATGTGGCTTCACCATTCTATTCGTGGCAAAACTAGTACCAGAGACCAAGGGGCGTACACTAGAAGAAGTTCAAGCATCTCTGAATCCATACTCAACAAAGAGATGA 1464 0.4385 MDGTKSTEPSEFSSPLLPAEAQGYGGNDDVDCEDKRQKETWSVPPILILTTLVAVSGSYVFGSAVGYSSPAQTGIMDDLNLGVAEYSLFGSILTIGAMIGAIISGRIADYAGRRAAMGFSEVFCILGWLAIAFSKVGWWLYVGRLLVGCGMGLLSYVVPVYIAEITPKNLRGGFTTVHQLMICCGVSLTYLIGAFLNWRILAIIGTIPCLVQLLGLFFIPESPRWLAKFGQWERSESVLQRLRGKDADVSQEAAEIRDFTEALQRETEASIIGLFQLQYLKSLTVGVGLMILQQFGGVNGIAFYASSIFISAGFSGSIGMIAMVAVQIPMTALGVLLMDKSGRRPLLLISASGTCLGCFLAALSFFLQDLHKWKEVSPILALVGVLVYTGSFSLGMGGIPWVIMSEIFPINVKGSAGSLVTLVSWLCSWIVSYAFNFLMSWSSSGTFFIFSSVCGFTILFVAKLVPETKGRTLEEVQASLNPYSTKR 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03700 487 Pfam Sugar (and other) transporter 51 478 IPR005828 GO:0016020|GO:0022857|GO:0055085
Pumo5g03700 487 ProSiteProfiles Major facilitator superfamily (MFS) profile. 50 469 IPR020846 GO:0022857
Pumo5g03700 487 SUPERFAMILY MFS general substrate transporter 33 477 IPR036259 -
Pumo5g03700 487 FunFam sugar transporter ERD6-like 6 41 480 - -
Pumo5g03700 487 ProSitePatterns Sugar transport proteins signature 1. 104 120 IPR005829 GO:0016020|GO:0022857|GO:0055085
Pumo5g03700 487 CDD MFS_GLUT6_8_Class3_like 48 475 IPR044775 GO:0008643|GO:0051119
Pumo5g03700 487 NCBIfam sugar porter family MFS transporter 83 476 IPR003663 GO:0016020|GO:0022857|GO:0055085
Pumo5g03700 487 PANTHER - 41 477 - -
Pumo5g03700 487 Gene3D MFS general substrate transporter like domains 40 481 IPR036259 -
Pumo5g03700 487 PRINTS Sugar transporter signature 293 303 IPR003663 GO:0016020|GO:0022857|GO:0055085
Pumo5g03700 487 PRINTS Sugar transporter signature 382 403 IPR003663 GO:0016020|GO:0022857|GO:0055085
Pumo5g03700 487 PRINTS Sugar transporter signature 141 160 IPR003663 GO:0016020|GO:0022857|GO:0055085
Pumo5g03700 487 PRINTS Sugar transporter signature 405 417 IPR003663 GO:0016020|GO:0022857|GO:0055085
Pumo5g03700 487 PRINTS Sugar transporter signature 58 68 IPR003663 GO:0016020|GO:0022857|GO:0055085
Pumo5g03700 487 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03700 Pumo-Chr5 86590095 86594360 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03700 53 411 Organic Solute Cotransporters AT1G54730 73.816 0.0 527
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03700 K03444 - gmx:100786465 889.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02713 5 73733015 73737784 Pumo5g03700 5 86590095 86594360 ECH
Pumo5g03700 5 86590095 86594360 Pumo5g03700 5 86590095 86594360 ECH