Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03588 ATGTCCTCTTTGAATCAATCTCTCTTTCCATACGACTCTTCGTCCTCGACTGTTTCTTCATCTGTGTCAACCACTGTGTTCAACCTATATGCTTTTTTAAGCTTAAACTCACCACCCATCACACATTCACACTCACACACACAGAAAGAGATGAGTTCTTCTCTACCTCAAGTTGCCAAAAACAAAGCAATGTGGCTGCATCCAAAGGTTTTGGGTTTTAATCCTTCTGAAAGATGGGGCCACTCTGCTTGCTTCTCCAAGGGGCTTATGTATGTCTTTGGGGGTTGCTGTGGGGGATTGCATTTTTGCGATGTTCTCACATTGGACCTTAACAAAATGGTTTGGAGCAAGCTTGCTACCACGGGTGAAAAGCCAGGGCCTAGAGATAGCCATAGTGCTGTTCTTGTGGGGCATAAAATGATAGTGTTTGGTGGCACAAATGGCTTCAAGAAGGTGAATCATATTCATATACTTGATCTTGTTACCAAAGAGTGGGTTCGACCTGAATGTAAAGGGACTCCTCCTTCTCCACGTGAAAGCCATACTGCCACGCTCGTTGGTGATGAAAGGATAGTGATATTTGGTGGTAGTGGAGAAGGTCATGCCAACTATTTAAATGATTTGCATATTCTTGATCTTCGAACCATGAGTTGGACTTCCCCTGAGTTGAAGGGTCATTTACCTGTTCCTAGGGACAGTCACAGTACCCTTGCAATTGGGAACAAGCTTATTGTGTATGGTGGAGACTCTGGTGATCAGTATCATGGCAATGTTCATATGCTTGATATGGCAACAATGACTTGGTCTAGATTGACAATTCAAGGTTCTCCACCAGGAGTCAGGGCAGGTCATGCTGCAGTGAACATTGGAACAAAGGTCTATATCATTGGGGGAGTTGGAGATAAACGCTACTATAATGACGTTTGGATCTTTGATATCTGCAATTTTTCATGGACTCAACTTGATATGCATTTTCAACACCCGCAAGGGCGATTTTCTCATACAGCTGTTGCTGCAGGCATGGATATTGCAATATATGGCGGGTGTGGAGAAGATGAACGTCCTCTCAATGAATTGTTAGTGTTGCAGCTTGGAGCAGAGCTTCCAAATGGACGTTACCACATTCCCATGTGCAAACCTTTTGGAACTTATTGGAATCAAGAAAAGAAGATTGTCCCGGGAGAAGCAGACACCAGCTCGAAAACCATACTCGTGAGGAATGATGTGGAAGCTTTCGGAAAAGGAGCTTATGAAATTGCATCAGAAAAAGTTCCATCTTATCACTTTGATTCAGGTACTTCACGACAGAAAAGGAGGAGAATTGCTGCTGCAAAGGTGTCGGATGTTGAATCAGAACAAGAAGAAAATTTTCTTTCATTGTCCCTTCATTCATCTCCATATCAATCCGATCAAGAACAGACCCCAAGTCAAAACTCAAATACATTATTTCCATCCACATGCCAACACGACAATGACTCAAATTATAAGAGAACTTTGATGAATATCCCACTTAAAACACCACAAGATCTTCACTTCCTAGAACATCAACTAAAACAAGAACAATGCCTTTATGTTCATGAGGATAGAAAAAGAGCTCAACATCAGGCTGCAGAGCAGAAATCCATGGTGCGAGGACCCATTCAACACCTGATTGGTGCTGAAGTTCGGGGGAGAGTTGATGGACCCTTTGACTCGGTTTCACTCTCACCTGCAGCTGTGAATGGAAGGATTTTCCGGGGAGTCATATTTGCACCTGGAGCAGGAGTTGTCTCAAAGGTTGCCAGTGTTAAACCAAATTGCTCTCTAACAAGTTCTTTGCCTTCCACTCAAGCATTTTTGAACTCCAATCATGTGGGTAATTTAAGGGCTTCCCAACAAGCACCTATTCCTATTCGTTTGCATGCAGAGCCATGCCACGGTTCACGGGAAATCCCAGTGGCTTTACCATTTCCAATCATGCGAGGCACTCCAACTGTTGTTTCCAAGGAACATAAAATCAGAAGTGATCTTCAAGGGTTGGCTTTAACACTTGGGGGACCTGCTAGTGGAAATCCTCAGGTAAAATATTGA 2070 0.4329 MSSLNQSLFPYDSSSSTVSSSVSTTVFNLYAFLSLNSPPITHSHSHTQKEMSSSLPQVAKNKAMWLHPKVLGFNPSERWGHSACFSKGLMYVFGGCCGGLHFCDVLTLDLNKMVWSKLATTGEKPGPRDSHSAVLVGHKMIVFGGTNGFKKVNHIHILDLVTKEWVRPECKGTPPSPRESHTATLVGDERIVIFGGSGEGHANYLNDLHILDLRTMSWTSPELKGHLPVPRDSHSTLAIGNKLIVYGGDSGDQYHGNVHMLDMATMTWSRLTIQGSPPGVRAGHAAVNIGTKVYIIGGVGDKRYYNDVWIFDICNFSWTQLDMHFQHPQGRFSHTAVAAGMDIAIYGGCGEDERPLNELLVLQLGAELPNGRYHIPMCKPFGTYWNQEKKIVPGEADTSSKTILVRNDVEAFGKGAYEIASEKVPSYHFDSGTSRQKRRRIAAAKVSDVESEQEENFLSLSLHSSPYQSDQEQTPSQNSNTLFPSTCQHDNDSNYKRTLMNIPLKTPQDLHFLEHQLKQEQCLYVHEDRKRAQHQAAEQKSMVRGPIQHLIGAEVRGRVDGPFDSVSLSPAAVNGRIFRGVIFAPGAGVVSKVASVKPNCSLTSSLPSTQAFLNSNHVGNLRASQQAPIPIRLHAEPCHGSREIPVALPFPIMRGTPTVVSKEHKIRSDLQGLALTLGGPASGNPQVKY 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03588 689 Pfam Galactose oxidase, central domain 89 135 - -
Pumo5g03588 689 Pfam Kelch motif 281 321 IPR006652 GO:0005515
Pumo5g03588 689 Gene3D - 59 169 IPR015915 GO:0005515
Pumo5g03588 689 PANTHER KELCH DOMAIN-CONTAINING PROTEIN 64 514 - -
Pumo5g03588 689 MobiDBLite consensus disorder prediction 465 490 - -
Pumo5g03588 689 SUPERFAMILY Kelch motif 123 365 IPR015915 GO:0005515
Pumo5g03588 689 Gene3D - 170 417 IPR015915 GO:0005515
Pumo5g03588 689 Pfam Galactose oxidase, central domain 177 219 - -
Pumo5g03588 689 Pfam Galactose oxidase, central domain 230 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03588 Pumo-Chr5 85341620 85346407 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03588 65 471 Acyl Lipid Metabolism Gene Families AT3G05420 29.439 4.85e-39 151
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03588 K20285 - gmx:100796366 1189.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03588 5 85341620 85346407 Pumo5g03588 5 85341620 85346407 ECH
Pumo5g03588 5 85341620 85346407 Pumo3g02040 3 31839981 31844066 PCT