Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02040 ATGGGGTCTCTGGTTGCTGAAACAGCCAAGAAGAAACCAATGTGGTTGTATCCAAAGGTTTTGGGTTTTAATCCTTCTGAAAGATGGGGGCACTCTGCTTGCTTCTCTGGGGGGCTTATGTATGTTTTTGGGGGCTGTTGTGGGGGACTACATTTTGGAGATGTTCTGTGTTTGGACCTTGACAAAATGGATTGGAGCAAGCTTGCCACCACGGGTGAAAAGCCAGGCCCTAGAGATAGCCACAGTGCTGTTCTTGTAGGGCACAAAATGATAGTGTTTGGTGGCACAAATGGGTTGAAGAAGGTGAATGACTCTCATATATTGGACCTTGTTACCAAAGAGTGGATTCGTCCCAAATGTGAAGGGACTCCTCCTTCTCCACGGGAAAGTCACACTGCAACCCTAGTTGGTGATGAAAGGCTAGTGATTTTTGGTGGCAGTGGAGAAGGTGACGCAAACTATTTAAATGATTTGCATGTTCTAGACCTTCGAACCATGAGGTGGACTTCTCCTGTGGTTAAAGGTGATTTACCTGTCCCTAGGGACAGTCACAGTACTCTTGCAATTGGGAACAAGCTTATTGTGTATGGTGGAGACTGTGGTGATCAGTATCAGGGCGATGTTAATGTGCTTGATATGGATACAATGACTTGGTCAAGGTTAAAAATTCAAGGCTCTTCTCCAGGAGTCAGGGCAGGTCATGCGGCTGTGAGTATTGGAACCAAGGTCTACATCATTGGAGGGGTGGGAGATAAACGCTATTATAATGACATATGGGTCTTTGATATCTGCACTTGTTCGTGGACTCAGCTTGATATTCGTGGCCAACAGCCACAGGGGCGGTTTTCTCACACTGCTGTTGTAGCAGACATGGATATTGCCATATATGGCGGGTGTGGAGAAGATGAACGTCCTTTGAACGAATTGTTAGTGTTGCAGCTTGGAGCAGAGCATCCAAATGGGCGTTACAACATTTCCATGTGCAAAGTTTTTGGAACTTATTGGAATCAAGAAAAGAGGACCATAGGAGCAGATACCAACTCGACAACTCCACGCAATGGGAATAATAATATGGAAGTCTTAGGTAAATGGGCTTATGAAGTTGTACCGGATAAAGTGAACCCTTGTCACTTTGATACTGGCACTTCACAACAGAAGAGGAGGAGAATTGCTGTTGCAAAGGTGTGGGATGTTGAATCAGAACAAGAAGAACATTCTCTTTCACTGTCTCAGCATTCATCTCCATCTCAATCTGATCAAGAACAGACCCCAGGTCAAAAAGCAAATGTTCCTATCATGGATTCTCAGCGGTATCATTGGTTCAAACAGATCAATAAAAGTCCAAGCTATTGCCAGCTTGACAATATCCCAAGTAATAACAGAGTTTTGAAGAATATCACACAAAGAAGTGTTCATCTCATAGAAAATCAACCAAAACAAGAACAGTATCTTCATGTTGATGAGGATAGAAAAGGAGATCGACACACCCAACACCTGATTGGTGCTGAAGTTCGGGGGAAAGTTGATGGGGCCTTTGATTCAGGTTTACTCATGACTGCAGCTGTGAATGGAAGAGTTTTCAGAGGAGTCTTATTTGCACCAGGACCAGGGGTATTCTCCACATGTGTTGAGCCAAACTGTTCTTTATCATGTTCATTTCCCTCCACTCAACCATTTATGAATTCAAATCATGTGAGGGATTCCCAGCAAGTAACTAATTGTTCGCGTGCAGAGCCCTGCCATGGCTTCAGGCAACCTATGCTAGCTCAGCCATCACCAATCATTAGAGGCACCACTACGTCTTTAGCCAAAGAGCATAAAATGAGGAGTGACCTTCAAGGGTTGGTTTTGACACTTGGGGGACCTGCAAGTGGAAACCATGCTTGA 1887 0.4446 MGSLVAETAKKKPMWLYPKVLGFNPSERWGHSACFSGGLMYVFGGCCGGLHFGDVLCLDLDKMDWSKLATTGEKPGPRDSHSAVLVGHKMIVFGGTNGLKKVNDSHILDLVTKEWIRPKCEGTPPSPRESHTATLVGDERLVIFGGSGEGDANYLNDLHVLDLRTMRWTSPVVKGDLPVPRDSHSTLAIGNKLIVYGGDCGDQYQGDVNVLDMDTMTWSRLKIQGSSPGVRAGHAAVSIGTKVYIIGGVGDKRYYNDIWVFDICTCSWTQLDIRGQQPQGRFSHTAVVADMDIAIYGGCGEDERPLNELLVLQLGAEHPNGRYNISMCKVFGTYWNQEKRTIGADTNSTTPRNGNNNMEVLGKWAYEVVPDKVNPCHFDTGTSQQKRRRIAVAKVWDVESEQEEHSLSLSQHSSPSQSDQEQTPGQKANVPIMDSQRYHWFKQINKSPSYCQLDNIPSNNRVLKNITQRSVHLIENQPKQEQYLHVDEDRKGDRHTQHLIGAEVRGKVDGAFDSGLLMTAAVNGRVFRGVLFAPGPGVFSTCVEPNCSLSCSFPSTQPFMNSNHVRDSQQVTNCSRAEPCHGFRQPMLAQPSPIIRGTTTSLAKEHKMRSDLQGLVLTLGGPASGNHA 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02040 628 Pfam Galactose oxidase, central domain 37 85 - -
Pumo3g02040 628 Pfam Galactose oxidase, central domain 87 135 - -
Pumo3g02040 628 Pfam Galactose oxidase, central domain 139 189 - -
Pumo3g02040 628 SUPERFAMILY Kelch motif 19 221 IPR015915 GO:0005515
Pumo3g02040 628 Gene3D - 120 361 IPR015915 GO:0005515
Pumo3g02040 628 MobiDBLite consensus disorder prediction 407 427 - -
Pumo3g02040 628 PANTHER KELCH DOMAIN-CONTAINING PROTEIN 14 574 - -
Pumo3g02040 628 Gene3D - 12 119 IPR015915 GO:0005515
Pumo3g02040 628 MobiDBLite consensus disorder prediction 402 427 - -
Pumo3g02040 628 Pfam Galactose oxidase, central domain 231 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02040 Pumo-Chr3 31839981 31844066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02040 15 412 Acyl Lipid Metabolism Gene Families AT3G05420 31.591 1.76e-40 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02040 K20285 - gmx:100787222 1226.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02040 3 31839981 31844066 Pumo3g02040 3 31839981 31844066 ECH
Pumo5g03588 5 85341620 85346407 Pumo3g02040 3 31839981 31844066 PCT