Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03560 ATGCACTTTGATCTGGCCAGTTCAGCCAACACCCTCACAAACTTCATGGGCTCAACCTACTTGCTTTCCCTTGTTGGAGGCTTCATCTCAGATACTTACTTGAACAGATTCACCACATGCTTGCTTTTCGGATCACTCGAGGTTCTGGCTTTGGCAATGCTCACAGTTCAAGCTGCTTCAAGTCATTTACACCCTGAAGCTTGTGGCAAGTCAAGCTGTGTCAAAGATGGCGTAGCATGCTTGTTGGCATTGGGAATGGGAGGGGTGAGAGGATCCATGACTGCATTTGGTGCTGACCAGTTTGATGAGAAGGATCCAACTGAGGCAAAAGCCCTTGCAAGTTTTTTCAATTGGCTTTTGCTCAGTTCAACTGTGGGAGCAATAACAGGAGTCACTGGTGTTGTGTGGGTTAGCACCCAAAAAGCATGGCATTGGGGGTTTTTCATAATAACCATAGCTTCCTCTGTTGGCTTTGTGACCCTTGCTCTTGGTAAGCCATTCTACCGCATCAAAACTCCAGGAGATAGCCCCACTTTGAGAATTGCTCAGGTTATTGTTGTGGCTTTTAAAAACCGAAAGTTGTCACTGCCGGAGTCACATGGAGAACTATATGAAATCAGTGATAAAGATGCCACAGTGGAGAAGATTGCCCACACCAACCAGATGAGGTTTCTAGACAAAGCGGCCATTATCCAAGAAAACTCAAAACCCCAGGCATGGAAGGTGTGCACAGTTACACAAGTTGAAGAGGTCAAGATCCTAACAAGAATGTTACCCATAGTAGCCAGTACCATTATACTGAACACTTGCATGGCACAACTCCAAACATTCTCAGTTCAACAAGGGAATGTGATGGACCTAAAACTTGGCTCTCTAACAGTGCCTGCACCATCCATTCCTGTCATCCCCCTTGTTTTCATAAGTGTCCTAGTTCCCATGTATGAACTATTTTTTGTGCCATTTGCAAGAAAGATCACTCACCACCCTTCAGGCATAACACAACTACAAAGGGTGGGTGTGGGGTTGGTACTCTCAGCAATATCAATGGCAGTGGCTGGGATTGTGGAAGTGAAAAGAAGGGACCAAGGGAGGAAAGACCCTTCTAAGCCTATAAGTCTATTTTGGCTTTCATTCCAATATGGCATATTTGGCATTGCAGATATGTTCACCCTTGTGGGACTATTGGAATTTTTCTACAGGGAATCACCTGCTAGCATGAAATCACTTTCTACCTCTCTCACGTGGTTGTCAACGTCTCTTGGTTACTTCTTGAGCACAGTCTTTGTCAATGTCATCAATGCTGTTACCAAAAAGATCACTCCTAGCAAACAAGGGTGGTTACATGGGTTCGATTTGAATCAAAATAACCTTAACTTGTTCTATTGGTTCCTAGCCACCCTTAGTTGCCTTAACTTTTTTAACTACCTCTATTGGGCCTCCAGGTACCAGTACAAACGTGAAGACTCAGGCCCAGGTTTTAAGCCTTTAGGTGAAATGCCTCTCAAAAGGGTAGAGAGAAAACAAGATTGGGAAGTTAGCCAAGAGTGA 1548 0.4451 MHFDLASSANTLTNFMGSTYLLSLVGGFISDTYLNRFTTCLLFGSLEVLALAMLTVQAASSHLHPEACGKSSCVKDGVACLLALGMGGVRGSMTAFGADQFDEKDPTEAKALASFFNWLLLSSTVGAITGVTGVVWVSTQKAWHWGFFIITIASSVGFVTLALGKPFYRIKTPGDSPTLRIAQVIVVAFKNRKLSLPESHGELYEISDKDATVEKIAHTNQMRFLDKAAIIQENSKPQAWKVCTVTQVEEVKILTRMLPIVASTIILNTCMAQLQTFSVQQGNVMDLKLGSLTVPAPSIPVIPLVFISVLVPMYELFFVPFARKITHHPSGITQLQRVGVGLVLSAISMAVAGIVEVKRRDQGRKDPSKPISLFWLSFQYGIFGIADMFTLVGLLEFFYRESPASMKSLSTSLTWLSTSLGYFLSTVFVNVINAVTKKITPSKQGWLHGFDLNQNNLNLFYWFLATLSCLNFFNYLYWASRYQYKREDSGPGFKPLGEMPLKRVERKQDWEVSQE 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03560 515 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 1 484 - -
Pumo5g03560 515 Pfam POT family 37 445 IPR000109 GO:0016020|GO:0022857|GO:0055085
Pumo5g03560 515 SUPERFAMILY MFS general substrate transporter 2 483 IPR036259 -
Pumo5g03560 515 Gene3D MFS general substrate transporter like domains 1 489 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03560 Pumo-Chr5 84993723 84996566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03560 1 489 Organic Solute Cotransporters AT1G69850 41.777 1.96e-132 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03560 K26548 - gmx:102670258 978.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03560 5 84993723 84996566 Pumo5g03560 5 84993723 84996566 ECH
Pumo5g03560 5 84993723 84996566 Pumo3g02082 3 32535610 32539121 PCT