Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03559 ATGAAGCTCACAGCCTCCCTCCTACTCTTGACTCTTGCTTTGGTGTTAACCACCATCTCTGCTTCAGATCCCGATCCTCTTCAAGACCTTTGCGTTGCAGACCTTGCCTCAGCGGTTAAAGTGAATGGATTCACCTGCAAAGATGCTACCAAGGTAAATGCCTCTGATTTCTTCTCAGACATACTAGCCAAACCAGGTGCCACAAACAACACCTATGGCTCCTTGGTGACTGGAGCCAACGTTCAGAAAATCCCAGGACTCAACACCCTTGGTGTGTCTTTGTCACGCGTTGACTATGCCCCAGGTGGCCTCAACCCACCTCACACGCACCCACGTGCCACCGAGATAGTGTTTGTGCTTGAAGGAACACTCGATGTGGGGTTCATAACCACAGCCAATGTGCTCATCTCAAAGACCATCAACAAGGGTGAGATATTTGTGTTCCCAAAAGGGTTAGTTCACTTCCAAAAGAACAATGCAAAGGAACCTGCTTCAGTGATTGCAGCCTTCAATAGTCAATTACCTGGCACACAGTCCATTGCTCTCACCTTGTTTACAGCCACTCCACCGGTTCCAGACAATGTGTTGACCAAGGCATTCCAGGTGGGCACCAAGGAGGTTGAGAAAATTAAGTCTAGGCTTGCACCTAAGAAATGA 657 0.4855 MKLTASLLLLTLALVLTTISASDPDPLQDLCVADLASAVKVNGFTCKDATKVNASDFFSDILAKPGATNNTYGSLVTGANVQKIPGLNTLGVSLSRVDYAPGGLNPPHTHPRATEIVFVLEGTLDVGFITTANVLISKTINKGEIFVFPKGLVHFQKNNAKEPASVIAAFNSQLPGTQSIALTLFTATPPVPDNVLTKAFQVGTKEVEKIKSRLAPKK 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03559 218 ProSitePatterns Germin family signature. 103 116 IPR019780 GO:0030145
Pumo5g03559 218 FunFam germin-like protein subfamily 2 member 1 22 216 - -
Pumo5g03559 218 PRINTS Germin signature 108 128 IPR001929 GO:0030145
Pumo5g03559 218 PRINTS Germin signature 171 186 IPR001929 GO:0030145
Pumo5g03559 218 PRINTS Germin signature 138 158 IPR001929 GO:0030145
Pumo5g03559 218 Gene3D Jelly Rolls 22 216 IPR014710 -
Pumo5g03559 218 SMART Cupin_1_3 59 208 IPR006045 -
Pumo5g03559 218 Pfam Cupin 62 207 IPR006045 -
Pumo5g03559 218 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 18 212 - -
Pumo5g03559 218 CDD cupin_OxOx 23 214 IPR001929 GO:0030145
Pumo5g03559 218 SUPERFAMILY RmlC-like cupins 23 213 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03559 Pumo-Chr5 84980020 84981663 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03559 8 218 Miscellaneous Gene Families AT3G05930 57.075 2.38e-87 255
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03559 - - gmx:100302722 399.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03559 5 84980020 84981663 Pumo3g02084 3 32553115 32555166 PCT