Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03530 ATGAAACCACTGGTGGGTGGGCCACTGCACCTGACGGCCCATTTGCTTGGGGCCTCTGCTTCAAGGAAGAAATTAGTCCTCAGACTAATTACTGTGATTCTACTAACACCTCAATGGCCTTGCTTCCCAGGCAAAAGTTACAAGGGTAGAGGACCCATTCAACTTTCTTGGAACTATAACTATGGTCCAGCAGGGAAGGCGTTGGGATTTGATGGGCTGAGGAACCCAGAGATCGTGGCGAACAATTCTGTGATAGCCTTCAAAACTGCTCTGTGGTTTTGGATGACAGAGCAAAAGCCAAAACCTTCATGCCACAATGTGATGGTTGGAAAATATGTGCCAACAGAAGCTGACATAGCAGCGAATCGAACAGCGGGTTATGGCTTGGTGACTAACATAATCAATGGTGGACTGGAATGTGGGATTCCAGGTGATGCAAGAGTGAATGATCGGATTGGGTTCTTTGAAAGATATACGAAGTTGTTCAACGTGGACACTGGACCTAACTTGGATTGTGCATATCAGAAACCCTTCTAA 537 0.4637 MKPLVGGPLHLTAHLLGASASRKKLVLRLITVILLTPQWPCFPGKSYKGRGPIQLSWNYNYGPAGKALGFDGLRNPEIVANNSVIAFKTALWFWMTEQKPKPSCHNVMVGKYVPTEADIAANRTAGYGLVTNIINGGLECGIPGDARVNDRIGFFERYTKLFNVDTGPNLDCAYQKPF 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03530 178 Gene3D Endochitinase, domain 2 36 81 - -
Pumo5g03530 178 ProSitePatterns Chitinases family 19 signature 2. 85 95 IPR000726 GO:0004568|GO:0006032|GO:0016998
Pumo5g03530 178 FunFam Endochitinase (Chitinase) 35 81 - -
Pumo5g03530 178 CDD chitinase_GH19 37 172 - -
Pumo5g03530 178 Gene3D - 82 178 - -
Pumo5g03530 178 Pfam Chitinase class I 37 172 IPR000726 GO:0004568|GO:0006032|GO:0016998
Pumo5g03530 178 PANTHER CHITINASE-RELATED 37 176 - -
Pumo5g03530 178 SUPERFAMILY Lysozyme-like 36 178 IPR023346 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03530 Pumo-Chr5 84554345 84555624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03530 38 178 Glycoside Hydrolase AT1G02360 81.560 3.69e-88 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03530 - - gmx:100784196 301.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03530 5 84554345 84555624 Pumo3g02112 3 32805996 32807274 PCT