Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02112 ATGGCATTCTCATTCCCCTCTAAGGGTATCTTTCTCTCTACCTTCTTTGCTATTCTGCTTCACTCCGTGTCTTTGGGAGCTGAAGCTCGTAGATCACCATCACCCATCTCTTCTCTCATTAGCAAAGAGCTTTTTGATTCCATTTTCCTACACAAAGATAACAATGCATGCCCTGCCAGAAACTTCTACACCTACGACTCCTTCATCAATGCATCCAAACGCTTCCCTAGATTTGGTACTACTGGTAGTTTAACCACGCGCAAGCGTGAGATTGCTGCCTTTCTTGCTCAGATTTCACATGAAACCACAGGTGGATGGGCCACTGCACCTGATGGACCCTATGCTTGGGGATTGTGCTTCAAGGAAGAAATTAGTCCTCAAAGTGACTATTGTGATTCCACCAACCAACAATGGCCTTGTTATCCAGGACAAAGTTACAAAGGCAGAGGTCCAATTCAACTCTCATGGAACTACAACTATGGGCCAGCAGGGAAGGCCTTGGGATTTGATGGGTTGAGAAACCCGGATGTGGTGTCAAACAATTCATTGATTGCCTTTCAAACAGGTCTCTGGTTTTGGATGACAGAGCAAAAGCCAAAACCTTCTTGCCACAATGTGATGATTGGAAAATATGTGCCAACACAAGCTGACATAGCAGCTAATCGAACTGCGGGGTATGGCCTAGTGACTAACATAATCAATGGTGGACTTGAATGTGGAATTCCTGATGATTCAAGGGTGAATGATCGGATTGGATACTTCAAAAGATATACAACCTTGTTTAACGTAGATACAGGACCTAACTTGGATTGTGCATATCAGAAGTCTTTCTAA 834 0.4388 MAFSFPSKGIFLSTFFAILLHSVSLGAEARRSPSPISSLISKELFDSIFLHKDNNACPARNFYTYDSFINASKRFPRFGTTGSLTTRKREIAAFLAQISHETTGGWATAPDGPYAWGLCFKEEISPQSDYCDSTNQQWPCYPGQSYKGRGPIQLSWNYNYGPAGKALGFDGLRNPDVVSNNSLIAFQTGLWFWMTEQKPKPSCHNVMIGKYVPTQADIAANRTAGYGLVTNIINGGLECGIPDDSRVNDRIGYFKRYTTLFNVDTGPNLDCAYQKSF 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02112 277 SUPERFAMILY Lysozyme-like 36 277 IPR023346 -
Pumo3g02112 277 FunFam Endochitinase (Chitinase) 122 180 - -
Pumo3g02112 277 PIRSF Endochitinase 13 277 IPR016283 GO:0004568|GO:0005975
Pumo3g02112 277 Gene3D - 43 277 - -
Pumo3g02112 277 ProSitePatterns Chitinases family 19 signature 1. 57 79 IPR000726 GO:0004568|GO:0006032|GO:0016998
Pumo3g02112 277 Pfam Chitinase class I 39 271 IPR000726 GO:0004568|GO:0006032|GO:0016998
Pumo3g02112 277 Gene3D Endochitinase, domain 2 122 180 - -
Pumo3g02112 277 PANTHER CHITINASE-RELATED 32 275 - -
Pumo3g02112 277 CDD chitinase_GH19 42 271 - -
Pumo3g02112 277 ProSitePatterns Chitinases family 19 signature 2. 184 194 IPR000726 GO:0004568|GO:0006032|GO:0016998
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02112 Pumo-Chr3 32805996 32807274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02112 20 277 Glycoside Hydrolase AT4G01700 69.767 3.44e-147 412
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02112 - - gmx:100785397 533.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02112 3 32805996 32807274 Pumo3g02112 3 32805996 32807274 ECH
Pumo5g03530 5 84554345 84555624 Pumo3g02112 3 32805996 32807274 PCT