Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03528 ATGAGGAGACCTTCAACTCTCGTGGAAGTGCTTCTGGTACTTGCATTGTTCTGTTGTAGCCCATGGACAGTGTGGAGCAACTCACTTTGCCAACAGACAAACGAGGAAGTTCGACCTCACAGTGTCAGCATCACCGAGTTTGGTGCAGTTGGCGATGGGGTCACTCTCAACACAAAAGCATTTCAGAATGCCATATTCTACCTAAATTCCTTTGCAGACAAAGGTGGAGCGAAGCTTTTTGTTCCGGCTGGCCGATGGTTAACTGGTAGTTTTGATCTAATCAGTCATCTAACTTTGTCGTTGGACAAGGATGCAGTAATTCTCGGATCAACGAACCCTGAAGATTGGCCAGTTGTTGATCCTCTACCGTCGTATGGGAGAGGAAGAGAGTTGCCAGGTGGAAGGCATAAGAGTCTCATTTATGGACACAATTTGACTGATGTTATCATAACAGGTAACAATGGAACTATCGATGGTCAAGGGAGTATCTGGTGGAACATGTTTAGGAACAGAACTCTGGATTATACACGTCCCCATTTGGTAGAATTGATGAATTCAACAGGGGTTCTCATTTCAAATTTAACCTTCTTGAATTCTCCATTTTGGACAATTCATCCTGTATATTGCAGCCAAGTTACAGTTCAGAATGTCAGGATCCTTGCTCCTCTTGATTCACCAAACACAGATGGGATTGATCCAGATTCTTCTGACAATGTATGCATTGAAGACTGTTATATAAGCACTGGTGATGATCTGATTGCCATCAAGAGCGGGTGGGATGAGTATGGCATTGCATACGGTCGCCCCTGCACAAACATTATCATCCACAGGCTAGTTGGTAAAACTCAAACAAGTGCAGGGATTGCTATTGGAAGTGAGATGTCCGGTGGTATATCTGAAGTTCATGCAGAAGATATTCAATTCTATGATTCATATAACGGAATCAGAATAAAGACTTCACCTGGCAGGGGTGGTTATGTTAGAAACATCTATGTCTCTAACAGTGAGCTTGGCTAA 1017 0.4326 MRRPSTLVEVLLVLALFCCSPWTVWSNSLCQQTNEEVRPHSVSITEFGAVGDGVTLNTKAFQNAIFYLNSFADKGGAKLFVPAGRWLTGSFDLISHLTLSLDKDAVILGSTNPEDWPVVDPLPSYGRGRELPGGRHKSLIYGHNLTDVIITGNNGTIDGQGSIWWNMFRNRTLDYTRPHLVELMNSTGVLISNLTFLNSPFWTIHPVYCSQVTVQNVRILAPLDSPNTDGIDPDSSDNVCIEDCYISTGDDLIAIKSGWDEYGIAYGRPCTNIIIHRLVGKTQTSAGIAIGSEMSGGISEVHAEDIQFYDSYNGIRIKTSPGRGGYVRNIYVSNSELG 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03528 338 SUPERFAMILY Pectin lyase-like 36 334 IPR011050 -
Pumo5g03528 338 Gene3D - 24 338 IPR012334 -
Pumo5g03528 338 SMART pbh1 209 235 IPR006626 -
Pumo5g03528 338 SMART pbh1 298 319 IPR006626 -
Pumo5g03528 338 SMART pbh1 236 268 IPR006626 -
Pumo5g03528 338 SMART pbh1 270 292 IPR006626 -
Pumo5g03528 338 Pfam Glycosyl hydrolases family 28 137 337 IPR000743 GO:0004650|GO:0005975
Pumo5g03528 338 PANTHER PECTIN LYASE-RELATED 14 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03528 Pumo-Chr5 84521300 84525053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03528 1 337 Glycoside Hydrolase AT3G62110 72.353 2.28e-179 503
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03528 - - gmx:100782602 659.448
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03528 5 84521300 84525053 Pumo3g02116 3 32855420 32859817 PCT