Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02116 ATGAGGACGTTTCTAATTGATGGTGGCACGTTTCTCTTGCAGTTGGTGGATGTGTTTCTGGTTCTTGCATTGTTCAGTTGTAGCCCATGGACAGTGTGGAGCAGCTCGTGCTGCAATCAGATAAACTTGAAGGAAGTCCGGCCTCACAGTGTCAGTATTACTGAATTTGGAGCAGTTGGCGATGGGATCACTCTCAATACAAAAGCATTTCAGAATGCCATCTTCTACCTAAATTCATTTGCAGATAAAGGTGGAGCCAAGCTTTTTGTCCCAGCTGGCCAGTGGCTAACTGGAAGCTTTGATCTCATCAGCCATTTAACTTTGTCGTTGGACAAGGATGCAGTAATTCTTGGATCAACGAACTCTGACGACTGGCCAGTTGTGGATCCTCTACCATCATATGGTCGTGGAAGGGAGTTGCCGGGTGGAAGGCATAGAAGCCTCATTTATGGGCGCAATTTAACTGATGTTGTCATAACAGGTAACAATGGAACTATAGATGGTCAAGGGAGTATTTGGTGGAACAATTTTCGGAACAAAACACTGGATTATACACGTCCTCATTTGGTTGAGTTGATGAATTCAACCGGGGTTCTCATTTCAAATGTAACTTTCTTGAATTCACCATTTTGGACTATTCACCCTGTATATTGCAGCAATGTAACAATTCAGAGCGTCACAATCATTGCTCCTCTTAGTTCACCAAATACAGATGGCATTAATCCAGATTCTTCAGACAATGTATGCATTGAAGACTGTTATATAAGCACTGGTGATGATCTGATTTCCATCAAAAGTGGATGGGATGGATATGGCATTTCATTTGGTCGACCCAGTACAAACATTAACATCCGCAGGCTCACTGGGAAAACAACGAGCGCAGGGATTGCTGTCGGAAGTGAGATGTCTGGAGGAGTATCAGAAGTTCATGCAGAAGATATTTACATTTTTGATTCACATAGTGCAATTAGAATAAAAACTTCTCCTGGCAGGGGTGGTTATGTTAGAAATGTCTATGTCTCTAACATGATCTTGGCTAATGTAGATATTGCTATTAGGTTCACTGGTTTATATGGAGAACATCCAGATGACACTTATGACCCTGATGCTCTACCTGTAATAGAAAGGATTACTATCAAGGATGTGATAGGGGAAAAAGTCAAACGTGCCGGCCTTATACAGGGTATTAAAGGTGACAACTTTGTCAATATCTGCCTATCAAACATCACCCTTAATGTGAGCTCAAAATTGCCATGGAACTGCTCTTATGTTAAAGGATACTCTGACTCGGTTTCACCTGAAGCTTGTGAGCCTCTCAAAGAGAGAATATTCCCCGAGCATTGTTCAGACTGTTACTATTTACCCAACCACTTGAAGAGTTTGAGTAATCAAAACTGGGGTGCTTGGTTACTGTCTTAG 1419 0.4193 MRTFLIDGGTFLLQLVDVFLVLALFSCSPWTVWSSSCCNQINLKEVRPHSVSITEFGAVGDGITLNTKAFQNAIFYLNSFADKGGAKLFVPAGQWLTGSFDLISHLTLSLDKDAVILGSTNSDDWPVVDPLPSYGRGRELPGGRHRSLIYGRNLTDVVITGNNGTIDGQGSIWWNNFRNKTLDYTRPHLVELMNSTGVLISNVTFLNSPFWTIHPVYCSNVTIQSVTIIAPLSSPNTDGINPDSSDNVCIEDCYISTGDDLISIKSGWDGYGISFGRPSTNINIRRLTGKTTSAGIAVGSEMSGGVSEVHAEDIYIFDSHSAIRIKTSPGRGGYVRNVYVSNMILANVDIAIRFTGLYGEHPDDTYDPDALPVIERITIKDVIGEKVKRAGLIQGIKGDNFVNICLSNITLNVSSKLPWNCSYVKGYSDSVSPEACEPLKERIFPEHCSDCYYLPNHLKSLSNQNWGAWLLS 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02116 472 Gene3D - 31 427 IPR012334 -
Pumo3g02116 472 Pfam Glycosyl hydrolases family 28 143 425 IPR000743 GO:0004650|GO:0005975
Pumo3g02116 472 SMART pbh1 306 327 IPR006626 -
Pumo3g02116 472 SMART pbh1 335 356 IPR006626 -
Pumo3g02116 472 SMART pbh1 279 300 IPR006626 -
Pumo3g02116 472 SMART pbh1 245 277 IPR006626 -
Pumo3g02116 472 SMART pbh1 218 244 IPR006626 -
Pumo3g02116 472 PANTHER PECTIN LYASE-RELATED 24 451 - -
Pumo3g02116 472 SUPERFAMILY Pectin lyase-like 45 439 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02116 Pumo-Chr3 32855420 32859817 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02116 15 472 Glycoside Hydrolase AT3G62110 68.670 0.0 634
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02116 - - gmx:100786985 910.598
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02116 3 32855420 32859817 Pumo3g02116 3 32855420 32859817 ECH
Pumo5g03528 5 84521300 84525053 Pumo3g02116 3 32855420 32859817 PCT