Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03485 ATGGTTGTGCCTTCTCCAAAGACAAGTTACAAGAAAACAAAGACAATGAGAATTCCAACGATAGACCTATCGATGGAAAGGTCAGAGTTGTCGGAAACAGTGGTGAAAGCCTGTGAGGAATACGGTTTCTTCAAGGTTGTTAACCACAATGTTCCGAAGGAGGTTATTTCAAGAATGGAAGAGGAGGGTGCAGAGTTTTTCTCCAAACCCAGCCACGAGAAGCGTCGTGCTGGCCCAGCAAGTCCTTTCGGTTATGGCTTCACCAATATCGGGCCCAACGGAGATATGGGTGACCTCGAGTATCTTCTCCTTCATGCTAATCCTCTTTCCATCTCTCAGAGATCCAAAACCATCGCTAATGACTCCACCAAGTTCAGTTGTGTTGTGAATGATTATGTGGAAGCAGTAAAAGAAGTAACGTGCGAGATTTTGGATCTGGTAGTTGAGGGATTGGGGGTCCCAGACAAGTTCGCACTAAGCAGGCTCATTAGAGATGTCAATAGTGATTCTGTTCTTAGGGTCAATCACTACCCTCCATTGAACCAGAAATTGAAGGGCAACAAGAATAGCATTGGTTTTGGGGCGCATTCTGACCCTCAGATCTTGACCATCATGCGTTCCAACGACGTGGGTGGCCTTCAAATTTACACCCGTGACGGGTTGTGGATACCTGTCCCTCCTGACCCCAATCAATTCTTTGTCATGGTTGGCGATGTCTTCCAGGTTTTGACAAATGGAAAGTTCATGAGCGTGAGGCACAGGGCATTAACCAACACATTGGCGGCAAGGATGTCAATGATGTACTTTGCAGCACCACCACTTGATTGGTGGATCACTCCGCTACCGAAGATGGTGTCACCACCACAAAATCCAAGTCTATATAAGCCCTTCACATGGGCCCAGTACAAGAAAGCAACATATTCCTTACGCCTCGGAGATTCTCGACTTGACCTCTTCAAGGCCCAGTTAGATACCCATCATGTATCTGCCTCTCCATCACAAATTCAATGTTAA 1014 0.4645 MVVPSPKTSYKKTKTMRIPTIDLSMERSELSETVVKACEEYGFFKVVNHNVPKEVISRMEEEGAEFFSKPSHEKRRAGPASPFGYGFTNIGPNGDMGDLEYLLLHANPLSISQRSKTIANDSTKFSCVVNDYVEAVKEVTCEILDLVVEGLGVPDKFALSRLIRDVNSDSVLRVNHYPPLNQKLKGNKNSIGFGAHSDPQILTIMRSNDVGGLQIYTRDGLWIPVPPDPNQFFVMVGDVFQVLTNGKFMSVRHRALTNTLAARMSMMYFAAPPLDWWITPLPKMVSPPQNPSLYKPFTWAQYKKATYSLRLGDSRLDLFKAQLDTHHVSASPSQIQC 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03485 337 Gene3D - 2 310 IPR027443 -
Pumo5g03485 337 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 18 306 - -
Pumo5g03485 337 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 167 272 IPR005123 -
Pumo5g03485 337 Pfam 2OG-Fe(II) oxygenase superfamily 169 271 IPR044861 -
Pumo5g03485 337 Pfam non-haem dioxygenase in morphine synthesis N-terminal 18 91 IPR026992 -
Pumo5g03485 337 FunFam Gibberellin 2-beta-dioxygenase 2 3 310 - -
Pumo5g03485 337 SUPERFAMILY Clavaminate synthase-like 9 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03485 Pumo-Chr5 84130827 84136615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03485 11 320 Glycosyltransferase AT5G59530 27.778 3.37e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03485 K04125 - gmx:100777233 646.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03485 5 84130827 84136615 Pumo5g03485 5 84130827 84136615 ECH
Pumo5g03485 5 84130827 84136615 Pumo3g02146 3 33196047 33200809 PCT