Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02146 ATGGTTGCGCCTTGTCCAACTTCCATGATGGTAAGAACCAAGAAAACAAAGGCCATGGGAGTTCCGACGATCGACCTTTCCATGGAAAGGTCGAAGTTGTCGGAACTCGTGGTGAAAGCGTGTGAGGAGTACGGTTTCTTCAAGGTGGTGAACCACAGTGTGCCAAAGGAGGTCATTGCAAGATTGGAAGAGGAGGGAAAGGAGTTTTTCTCCAAAACCTCCTCAGAGAAGCGTCAAGCTGGTCCTGCCAATCCCTTTGGCTATGGCTGCAGAAACATTGGCCCCAATGGCGATATGGGTCACCTCGAGTATCTCCTCCTTCACACCAATCCTCTTTCCATATCTGAGAGATCCAAAACCATAGCAAACGACCCTACCAAGTTCAGTTGTGCCGTGAATGATTATATAGAAGCAGCTAAGGAACTAACATGTGAGCTTCTTGATCTGGTGGCTGAGGGTTTGTGGGTCCAAGACAAGTTCTCACTCAGCAAGCTCATCAGAGACGTCCACAGTGACTCTCTCCTCAGGATCAATCAATACCCTCCCGTGAGCCTAAAGGGCACCAAGAATTGGGACACGTCCAAAATTGAGGCACATCAACAACTCCAGAGCCAAAATAATAACAATAATAATAATAACAACAACATTGGCTTTGGAGAGCATTCTGACCCTCAGATCTTGACCATCATGCGGTCCAACAACGTTGATGGCCTTCAGATTTCCACCCACGATGGCTTGTGGATCCCTGTCCCCCCTGACCCCAATGAATTCTTCGTTATGGTTGGTGATGCCTTGCAGGTTTTGTCAAACGGAAGGTTTGTGAGCGTGAGACACAGAGTGTTGACGAACACAACGAAGGCCAGAATGTCAATGATGTACTTTGCAGCACCACCGCTGAATTGGTGGATCAGTCCACTGCCGAAGATGGTGACACCCCACAATCCAAGTCTGTATAAGCCCTTCACGTGGGCCCAATACAAGCAAGCAGCATACTCTCTAAGATTGGGAGACACTCGCCTTGATCTCTTCAAGATCCAACGACAGCAAGATAGCCATCTCGCACCTGCTTCTCCCTGA 1077 0.4856 MVAPCPTSMMVRTKKTKAMGVPTIDLSMERSKLSELVVKACEEYGFFKVVNHSVPKEVIARLEEEGKEFFSKTSSEKRQAGPANPFGYGCRNIGPNGDMGHLEYLLLHTNPLSISERSKTIANDPTKFSCAVNDYIEAAKELTCELLDLVAEGLWVQDKFSLSKLIRDVHSDSLLRINQYPPVSLKGTKNWDTSKIEAHQQLQSQNNNNNNNNNNIGFGEHSDPQILTIMRSNNVDGLQISTHDGLWIPVPPDPNEFFVMVGDALQVLSNGRFVSVRHRVLTNTTKARMSMMYFAAPPLNWWISPLPKMVTPHNPSLYKPFTWAQYKQAAYSLRLGDTRLDLFKIQRQQDSHLAPASP 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02146 358 SUPERFAMILY Clavaminate synthase-like 6 337 - -
Pumo3g02146 358 Gene3D - 3 334 IPR027443 -
Pumo3g02146 358 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 170 297 IPR005123 -
Pumo3g02146 358 PRINTS Isopenicillin N synthase signature 257 283 - -
Pumo3g02146 358 PRINTS Isopenicillin N synthase signature 37 54 - -
Pumo3g02146 358 PRINTS Isopenicillin N synthase signature 221 242 - -
Pumo3g02146 358 FunFam Gibberellin 2-beta-dioxygenase 2 4 334 - -
Pumo3g02146 358 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 21 329 - -
Pumo3g02146 358 Pfam 2OG-Fe(II) oxygenase superfamily 207 296 IPR044861 -
Pumo3g02146 358 Pfam non-haem dioxygenase in morphine synthesis N-terminal 21 85 IPR026992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02146 Pumo-Chr3 33196047 33200809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02146 12 345 Glycosyltransferase AT5G59530 25.145 2.01e-24 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02146 K04125 - gmx:100779525 685.641
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02146 3 33196047 33200809 Pumo3g02146 3 33196047 33200809 ECH
Pumo5g03485 5 84130827 84136615 Pumo3g02146 3 33196047 33200809 PCT