LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo5g03447	ATGTCTTCCACCTTCTCACCCCTCATTCCCGTCTTCATCCTCCTCTTCTTGGTCCGGCACACGTGCGAGGCACGTGACCCGTTCGCGTGCGATCCAAAAAATGGCGTCACGAAGAACTTGCCGTTTTGCAAGGTGTCGCTGGCGATACCGGAGAGGGTGAAGGACCTGATCGGAAGGTTGACGCTGCAAGAGAAGGTTAGGCTTCTAGTGAACAATGCCGCGGCGGTTCCACGGCTCGGGATGAAAGGTTACGAGTGGTGGTCGGAGGCACTCCATGGGGTTTCAAATGTGGGTCCCGGAGTCAAGTTTAATGCCCAGTTTCCCGGCGCTACTAGCTTCCCTCAAGTCATCACCACCGCTGCTTCCTTCAATGCTTCTCTCTGGGAGGCAATCGGACAGGTAGTGTCGGATGAGGCAAGGGCCATGTACAACGGTGGAACAGCAGGGCTCACGTATTGGAGCCCAAACGTGAACATTTTCAGGGACCCAAGGTGGGGACGTGGACAGGAAACTCCCGGTGAGGACCCTGTGCTAGCCGGTACATATGCAGCTAGTTACGTCAGAGGCCTACAGGGAACCGACGCTAACCGGTTGAAGGTTGCTGCTTGTTGCAAACACTTCACCGCTTATGACCTCGATAATTGGAATGGCATGGATCGATTCCACTTTAATGCACAGGTGAGTAAGCAGGACATAGAGGATACATTCGACGTGCCATTCAGGATGTGTGTGAGCGAAGGCAAAGTAGCCAGTGTCATGTGTTCTTACAATCAAGTCAATGGGGTCCCTACCTGTGCCGACCCCAACCTCCTCAAGAAAACAGTTCGTGGCCTGTGGCAACTTGATGGGTACATTGTATCAGACTGTGATTCTGTTGGGGTGTTTTATGATAACCAACATTACACACCAACGCCAGAAGAAGCTGCTGCCGATGCCATTAAAGCAGGCTTGGATTTAGACTGTGGGCCTTTCCTAGCTGTGCACACGCAGGATGCGGTCAAAAAAGGCTTGCTAAGTGAAGCTGATGTTAATGGTGCTTTGGTGAATACACTGACGGTCCAAATGAGGTTAGGGATGTTTGATGGAGAGCCATCGGCCCATCCATATGGCAACTTGGGCCCAAAAGATGTGTGCAAACCGGCCCATCAAGAACTCGCTCTTGAAGCTGCCAGACAAGGAATTGTACTTCTTAAGAACACTGGTCCTGTTTTGCCTCTCTCCCCACAGCGTCACCATACCGTGGCAGTCATTGGACCCAATTCTAAAGCCACTGTTACAATGATTGGAAACTATGCTGGTGTTGCTTGTGGGTATACCAGCCCCTTACAAGGGATAGGAAGATATGCCCGGACTATTCATCAGTTGGGTTGTGAAAACGTAGCTTGTAAGAATGACAAGCTGTTTGGGCCTGCTATAAATGCGGCCCGTCAAGCAGATGCAACTGTTTTAGTGATGGGCTTGGACCAGTCCATTGAAGCTGAAACGGTGGACAGGACTGGCTTGCTTTTGCCTGGTCGTCAACAAGACCTTGTTTCAAAAGTGGCAGCTGCCTCAAAGGGACCAACTATTTTGGTCTTAATGTCTGGTGGTCCTGTGGATATCACTTTTGCAAAGAATAACCCTAGAATTGTGGGTATCCTGTGGGCTGGTTATCCAGGCCAAGCTGGTGGTGCTGCCATTGCAGATATACTGTTTGGAACAGCTAACCCAGGGGGCAAGCTGCCTGTGACATGGTACCCACAAGAATACCTAACAAAGTTGCCAATGACAAATATGGCAATGCGAGCAAGCAAATCAGCAGGGTACCCAGGAAGAACGTATAGATTCTACAATGGTCCAGTGGTGTATCCATTTGGACACGGGTTGACATACACACACTTCGTTCATACATTAGCAAGTGCTCCCACAGTGGTGTCAGTTCCCGTGAATGGTCACCGCCGTGCCAATGTCTCCAATATTTCAAACAGGGCAATCAGAGTGACACATGCACGGTGTGACAAGCTCTCCATCGCCCTCGAGGTGGACATTAAAAATGTGGGGTCCAGAGATGGCACGCACACGTTGCTAGTGTTCTCTGCTCCTCCTGCAGGTGGTGGCCATTGGGCACTAGAGAAACAACTCGTGGCCTTTGAGAAGGTCCATGTTCCTGCCAAGGGTCAACAGAGAGTGGGAGTCGATATTCACGTGTGCAAGCTCCTAAGTGTTGTGGATAAGTCTGGGATTAGGAGAATCCCGTTGGGGGAACACAGTTTTAACATTGGCGATGTTAAACACTCCGTCTCACTTCAAGCTGCAGCACTTGGGATTATCAAGTCCTGA	2319	0.5058	MSSTFSPLIPVFILLFLVRHTCEARDPFACDPKNGVTKNLPFCKVSLAIPERVKDLIGRLTLQEKVRLLVNNAAAVPRLGMKGYEWWSEALHGVSNVGPGVKFNAQFPGATSFPQVITTAASFNASLWEAIGQVVSDEARAMYNGGTAGLTYWSPNVNIFRDPRWGRGQETPGEDPVLAGTYAASYVRGLQGTDANRLKVAACCKHFTAYDLDNWNGMDRFHFNAQVSKQDIEDTFDVPFRMCVSEGKVASVMCSYNQVNGVPTCADPNLLKKTVRGLWQLDGYIVSDCDSVGVFYDNQHYTPTPEEAAADAIKAGLDLDCGPFLAVHTQDAVKKGLLSEADVNGALVNTLTVQMRLGMFDGEPSAHPYGNLGPKDVCKPAHQELALEAARQGIVLLKNTGPVLPLSPQRHHTVAVIGPNSKATVTMIGNYAGVACGYTSPLQGIGRYARTIHQLGCENVACKNDKLFGPAINAARQADATVLVMGLDQSIEAETVDRTGLLLPGRQQDLVSKVAAASKGPTILVLMSGGPVDITFAKNNPRIVGILWAGYPGQAGGAAIADILFGTANPGGKLPVTWYPQEYLTKLPMTNMAMRASKSAGYPGRTYRFYNGPVVYPFGHGLTYTHFVHTLASAPTVVSVPVNGHRRANVSNISNRAIRVTHARCDKLSIALEVDIKNVGSRDGTHTLLVFSAPPAGGGHWALEKQLVAFEKVHVPAKGQQRVGVDIHVCKLLSVVDKSGIRRIPLGEHSFNIGDVKHSVSLQAAALGIIKS	772

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo5g03447	772	Gene3D	Immunoglobulins	648	768	IPR013783	-
	Pumo5g03447	772	Pfam	Glycosyl hydrolase family 3 N terminal domain	107	349	IPR001764	GO:0004553\|GO:0005975
	Pumo5g03447	772	Pfam	Fibronectin type III-like domain	688	755	IPR026891	-
	Pumo5g03447	772	FunFam	Probable beta-D-xylosidase 2	649	769	-	-
	Pumo5g03447	772	FunFam	probable beta-D-xylosidase 7	52	366	-	-
	Pumo5g03447	772	SUPERFAMILY	Beta-D-glucan exohydrolase, C-terminal domain	394	627	IPR036881	GO:0004553\|GO:0005975
	Pumo5g03447	772	Gene3D	-	380	625	IPR036881	GO:0004553\|GO:0005975
	Pumo5g03447	772	Pfam	Glycosyl hydrolase family 3 C-terminal domain	394	624	IPR002772	GO:0004553\|GO:0005975
	Pumo5g03447	772	SMART	Fn3_like_2	686	757	IPR026891	-
	Pumo5g03447	772	PRINTS	Glycosyl hydrolase family 3 signature	274	292	IPR001764	GO:0004553\|GO:0005975
	Pumo5g03447	772	PRINTS	Glycosyl hydrolase family 3 signature	113	132	IPR001764	GO:0004553\|GO:0005975
	Pumo5g03447	772	PRINTS	Glycosyl hydrolase family 3 signature	200	216	IPR001764	GO:0004553\|GO:0005975
	Pumo5g03447	772	FunFam	probable beta-D-xylosidase 2	379	625	-	-
	Pumo5g03447	772	SUPERFAMILY	(Trans)glycosidases	40	393	IPR017853	-
	Pumo5g03447	772	Gene3D	-	52	367	IPR036962	GO:0004553\|GO:0005975
	Pumo5g03447	772	PANTHER	SUGAR HYDROLASE-RELATED	23	760	IPR044993	GO:0009044\|GO:0045493

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo5g03447	Pumo-Chr5	83763946	83770804	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo5g03447	13	772	Glycoside Hydrolase	AT1G02640	73.526	0.0	1177

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo5g03447	-		-	gmx:100789316	1521.91

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pumo5g03447	5	83763946	83770804	Pumo5g03447	5	83763946	83770804	ECH
	Pumo5g03447	5	83763946	83770804	Pumo3g02185	3	33614078	33622656	PCT