LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo3g02185	ATGGCTTCCATCTTTTCACCCCTCACCACTATCTTCCTCCTCCTCCTCCTTTGGGGCGGCGAGGCACGTGACCCTTTCGCGTGTGACCCTAAGGACACCGCCACAAGGAGCTTACCATTTTGCAAGGCGTCGTTGCCAATAGCAGCAAGGGTGAAGGACCTCATTGGAAGGTTGACGCTGCAAGAAAAAGTTAACCTGCTAGTGAACAATGCCGCGGCAGTTCCACGGCTTGGAATCAAAGGTTATGAGTGGTGGTCGGAGGCACTACATGGAGTATCAAATGTGGGTCCTGGAACCAAGTTTGGTGGCCAATTCCCTGCCGCCACTAGCTTCCCTCAAGTCATCACCACCGCTGCTTCTTTCAATGCTTCTTTGTGGGAAGCAATCGGACGGGTTGCCTCGGACGAAGCAAGAGCAATGTACAATGGAGGAACGGCTGGGCTGACATACTGGAGCCCAAACGTGAACATTTTTAGGGACCCACGGTGGGGCCGCGGACAGGAGACTCCCGGTGAGGACCCAATACTAGCCGGTAGATATGCAGCCAGTTACGTTAGGGGACTACAGGGAACGGACGGTAACCGGTTGAAGGTCGCTGCCTCTTGCAAACACTTTACGGCTTATGACCTTGATAATTGGAACGGCGTCGATCGCTTTCACTTTAATGCACAGGTTAGCAAGCAGGACATTGAGGACACGTTCAATGTGCCATTCAGGATGTGCGTGAAGGAAGGCAAAGTAGCGAGTGTGATGTGTTCTTACAATCAGGTTAACGGTGTTCCTACCTGTGCGGACCCCATCCTCCTAAAGAGAACAGTTCGTGGCCAATGGGGTCTTAATGGGTACATTGTATCAGACTGTGACTCTGTTGGGGTGTTTTACACTAGCCAACATTACACATCTACGCCAGAAGAAGCTGCTGCCGATGCCATTAAAGCAGGTTTGGATTTGGATTGTGGGCCTTTTCTAAGACAGCATACGCAGAATGCTGTGAAAAAAGGCCTCATAAGCGAAGCTGATGTGAATGGGGCCTTATTGAACACATTAACAGTCCAAATGAGGTTAGGGATGTATGATGGTGAGCCATCAAGTCATCCATATGGCAACCTTGGTCCAAGAGATGTGTGCACCCCAAGTCACCAAGAGCTAGCCCTTGAAGCCGCGAGACAAGGGATTGTGCTTCTTAAAAACAAAGGTCCTTCTTTGCCTCTCTCCACAAGGCATTACCGCACCGTGGCTGTTATTGGGCCCAATTCTAACGTCACTGTCTCAATGATCGGCAACTATGCTGGTATTGCTTGTGGATACACAAGCCCCTTACAAGGAATCGGGAGATACACCAAGACTATTCATGAGATGGGTTGCGCAAATGTGCATTGTACTGATGACAAGCAATTCGGGAGAGCAATCAATGCAGCCCAACAAGCAGATGCAACTGTGCTAGTGATGGGCCTGGACCAGTCCAATGAAGCTGAAACCGTGGACCGGGCTGGCCTGCTTCTTCCTGGACGTCAACAAGACCTTGTGTCCAAAGTAGCAGCTGCCTCCAAGGGCCCAACAATTTTGGTCATAATGTCTGGTGGGCCTGTGGATGTAACTTTTGCAAAGAATGATCCTCGAATCCAAGGCATCTTGTGGGCCGGTTATCCCGGTCAAGCTGGTGGTGCCGCAGTTGCAGATATCTTGTTTGGAACATCTAACCCTGGAGGCAAGTTGCCTATGACATGGTACCCACAAGGGTACATTAAAAACTTGGCAATGACAAATATGGCAATGCGAGCAAGCCGATCCAAGGGGTACCCTGGAAGAACCTATCGATTTTACAATGGCCCAGTGGTGTATCCATTTGGTTACGGATTGTCTTACACACACTTTGTTCATACATTAGCTAGTGCGCCCAAAGTGGTCTCAATTCCCGTGGATGGGCACCGCCACGGCAACAGCTCCAACATTGCGAACAAGGCAATTAAAGTGACACATGCACGATGTGGCAAGCTTTCCATTAGCCTTCATGTGGACGTTAAAAATGTTGGCTCCAAAGATGGCACTCACACGTTGCTAGTGTTCTCGGCACCACCTGCAGGTAATGGCCATTGGGCCCCACACAAGCAACTTGTGGCATTCGAGAAAGTCCATGTTCCCGCCAAGGCCCAACAGCGAGTGACAGTCAACATTCATGTTTGTAAGCTCCTGAGTGTGGTTGACAGGTCTGGGACTAGGAGAATTCCAATGGGTTTGCACAGTCTTCACATTGGTGATGTTAAACACTCCCTCTCACTTCAGGCACAAACACTTGGAATTATCAAAACCTAA	2313	0.4989	MASIFSPLTTIFLLLLLWGGEARDPFACDPKDTATRSLPFCKASLPIAARVKDLIGRLTLQEKVNLLVNNAAAVPRLGIKGYEWWSEALHGVSNVGPGTKFGGQFPAATSFPQVITTAASFNASLWEAIGRVASDEARAMYNGGTAGLTYWSPNVNIFRDPRWGRGQETPGEDPILAGRYAASYVRGLQGTDGNRLKVAASCKHFTAYDLDNWNGVDRFHFNAQVSKQDIEDTFNVPFRMCVKEGKVASVMCSYNQVNGVPTCADPILLKRTVRGQWGLNGYIVSDCDSVGVFYTSQHYTSTPEEAAADAIKAGLDLDCGPFLRQHTQNAVKKGLISEADVNGALLNTLTVQMRLGMYDGEPSSHPYGNLGPRDVCTPSHQELALEAARQGIVLLKNKGPSLPLSTRHYRTVAVIGPNSNVTVSMIGNYAGIACGYTSPLQGIGRYTKTIHEMGCANVHCTDDKQFGRAINAAQQADATVLVMGLDQSNEAETVDRAGLLLPGRQQDLVSKVAAASKGPTILVIMSGGPVDVTFAKNDPRIQGILWAGYPGQAGGAAVADILFGTSNPGGKLPMTWYPQGYIKNLAMTNMAMRASRSKGYPGRTYRFYNGPVVYPFGYGLSYTHFVHTLASAPKVVSIPVDGHRHGNSSNIANKAIKVTHARCGKLSISLHVDVKNVGSKDGTHTLLVFSAPPAGNGHWAPHKQLVAFEKVHVPAKAQQRVTVNIHVCKLLSVVDRSGTRRIPMGLHSLHIGDVKHSLSLQAQTLGIIKT	770

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo3g02185	770	FunFam	probable beta-D-xylosidase 2	377	623	-	-
	Pumo3g02185	770	Pfam	Glycosyl hydrolase family 3 N terminal domain	104	345	IPR001764	GO:0004553\|GO:0005975
	Pumo3g02185	770	SUPERFAMILY	(Trans)glycosidases	38	391	IPR017853	-
	Pumo3g02185	770	PRINTS	Glycosyl hydrolase family 3 signature	272	290	IPR001764	GO:0004553\|GO:0005975
	Pumo3g02185	770	PRINTS	Glycosyl hydrolase family 3 signature	111	130	IPR001764	GO:0004553\|GO:0005975
	Pumo3g02185	770	PRINTS	Glycosyl hydrolase family 3 signature	198	214	IPR001764	GO:0004553\|GO:0005975
	Pumo3g02185	770	Gene3D	-	378	623	IPR036881	GO:0004553\|GO:0005975
	Pumo3g02185	770	SMART	Fn3_like_2	684	755	IPR026891	-
	Pumo3g02185	770	FunFam	Probable beta-D-xylosidase 2	647	767	-	-
	Pumo3g02185	770	Gene3D	-	50	366	IPR036962	GO:0004553\|GO:0005975
	Pumo3g02185	770	Pfam	Fibronectin type III-like domain	686	753	IPR026891	-
	Pumo3g02185	770	Gene3D	Immunoglobulins	647	768	IPR013783	-
	Pumo3g02185	770	FunFam	probable beta-D-xylosidase 7	50	364	-	-
	Pumo3g02185	770	SUPERFAMILY	Beta-D-glucan exohydrolase, C-terminal domain	392	625	IPR036881	GO:0004553\|GO:0005975
	Pumo3g02185	770	PANTHER	SUGAR HYDROLASE-RELATED	22	757	IPR044993	GO:0009044\|GO:0045493
	Pumo3g02185	770	Pfam	Glycosyl hydrolase family 3 C-terminal domain	392	622	IPR002772	GO:0004553\|GO:0005975

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo3g02185	Pumo-Chr3	33614078	33622656	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pumo3g02185	21	770	Glycoside Hydrolase	AT1G02640	73.467	0.0	1174

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo3g02185	-		-	gmx:100798630	1478

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Pumo3g02185	3	33614078	33622656	Pumo3g02185	3	33614078	33622656	ECH
	Pumo5g03447	5	83763946	83770804	Pumo3g02185	3	33614078	33622656	PCT