Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03425 ATGCAACTGTTCCTGCACTGGATTCAGAACTTTCTTGCCCCAATATTGCAGTTTCAACTTGTTGCTCCTCAAACACACATGAAGGGGCTAGTGGCAGTGCTTTTACTTGTAGCAATAAGCACTGCTGTGGAAAGCAACGGAGAAGACAATGGTGGACCATGTAAACAGAATGCATTGAAGGCTAGGCCTCACAGTGTGTCGATCTTGGAGTTTGGGGCGGTTGGAGATGGAATAACACTGAACACAGTTGCGTTCCAAAATGCAATATTTTATCTCAAGTCATTTGCTGACAAAGGTGGTGCCCAACTATATGTTCCATCTGGCACATGGCTTACTGGGAGTTTTAACCTCACCAGTCACCTCACTCTGTTCCTTGAGAGAGGTGCTACCATCATTGCATCTCAGGATTATTCTCATTGGGAAGTAGTGGATTCCCTCCCTTCTTATGGTAGAGGAATTGGGAGATATCGCAGCTTGATCTATGGGCAGAATTTAAGTGATGTGGTAGTTACAGGTGATAATGGAACTATAGATGGGCAAGGCTCTATCTGGTGGGATTTGTTGAGTTCTAATTCCTTAAATTACAGTCGACCAAATCTTATAGAATTTGTTGATTCTGTTGATGTCATAATTTCGAATTTGACTTTTCTACACTCTCCTGCTTGGGACATCCATCCAGTATATTGCAGTAACGTTCAAATTCAAAACATAACTTCTCGGGCACCAGCTGAATCCCTTTACACAAGTGGTATAGTTCCAGATTCTTCTCAGTATGTATGCATTGAGAACAGTAACATTAGCACTGGTCATGATGCAATTGTGCTGAAGAGTGGTTGGGATCAGTATGGCATTTCCTATGGAAAACCAACCACGAATGTCCACATCAGTAATGTTTACCTACAATCATCATCAGGTGCAGGCTTGGCATTTGGGAGTGAGATGTCCGGGGGAATATCTGATATTATTGCTGAGAAGCTTCACGTACTCAACTCGCCTATTGGCATTGAATTGAAAACAACTAGGGGTAGAGGTGGCTATATGAAAAGAATCTTCATTTCTGATGCAGAATTGGAGAATATTTACTTAGGAATCAGCATGACAGGATACTCCGGTTTCCATCCAGATGAAGAGTATGACACAAGTGCACTTCCAGTTGTTGGTAGCATTACTTTCAAGAATGTTATTGGTGCAAATATTAGTGTTGCTGGGAATTTTTCAGGAATAGTTGAATCACCATTCTCAACAATCTGTCTTTCAAATGTGACCTTTTCTCTCAGTTCTGAGCCATCTCTTTCATGGTTCTGTTCTAATGTAATTGGTTTCTCTGAGGAGGTGATTCCCGAGCCATGTCCTGATCTCCGGAGCTTGAATTCCAAGTTTTCCTTTTCTTGCTTTTCTTCCCTATATTCACACTTTAAATTTGAAATTCAAAATATTAGTGGCGACAAGTTAGTTGATGATATATCAGAAGGTTTGGTGTTACAGAATAGGGGAGGTAGCGTGGTTTTAGGGAAAGCTTGTTACGACGAGGAGGAATTGGTGGGAAGTAAATTAGTTTTGGCGAAATCTTTGGCGGAGATTGAGGAGGTTGGTATTGATAGAAATGATGAATCTACTAAAGATATATCAAAGGAGGTTCCCAATGCTGATTTTGAAGGATCGGAGGATCACGGGGCCATTGAGAAGGTCCATTTTATGTATAAAGAAGGAACAGTTGTGCATGATTATATGGGTCATAAAAAGTTGGCCCAATATGAGCAGTTTCATGGGCTTTATGAATCGGACAATTGTGGTGAACAGAATTGTGAAAAAGACAAAACTATGGTATAA 1830 0.4087 MQLFLHWIQNFLAPILQFQLVAPQTHMKGLVAVLLLVAISTAVESNGEDNGGPCKQNALKARPHSVSILEFGAVGDGITLNTVAFQNAIFYLKSFADKGGAQLYVPSGTWLTGSFNLTSHLTLFLERGATIIASQDYSHWEVVDSLPSYGRGIGRYRSLIYGQNLSDVVVTGDNGTIDGQGSIWWDLLSSNSLNYSRPNLIEFVDSVDVIISNLTFLHSPAWDIHPVYCSNVQIQNITSRAPAESLYTSGIVPDSSQYVCIENSNISTGHDAIVLKSGWDQYGISYGKPTTNVHISNVYLQSSSGAGLAFGSEMSGGISDIIAEKLHVLNSPIGIELKTTRGRGGYMKRIFISDAELENIYLGISMTGYSGFHPDEEYDTSALPVVGSITFKNVIGANISVAGNFSGIVESPFSTICLSNVTFSLSSEPSLSWFCSNVIGFSEEVIPEPCPDLRSLNSKFSFSCFSSLYSHFKFEIQNISGDKLVDDISEGLVLQNRGGSVVLGKACYDEEELVGSKLVLAKSLAEIEEVGIDRNDESTKDISKEVPNADFEGSEDHGAIEKVHFMYKEGTVVHDYMGHKKLAQYEQFHGLYESDNCGEQNCEKDKTMV 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03425 609 PANTHER PECTIN LYASE-RELATED 34 459 - -
Pumo5g03425 609 SUPERFAMILY Pectin lyase-like 53 453 IPR011050 -
Pumo5g03425 609 Pfam Glycosyl hydrolases family 28 155 438 IPR000743 GO:0004650|GO:0005975
Pumo5g03425 609 Gene3D - 54 443 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03425 Pumo-Chr5 83435046 83443861 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03425 27 466 Glycoside Hydrolase AT3G16850 60.000 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03425 - - gmx:100787190 865.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03425 5 83435046 83443861 Pumo5g03425 5 83435046 83443861 ECH
Pumo5g03425 5 83435046 83443861 Pumo3g02213 3 33949880 33953189 PCT