Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02213 ATGAAGAGGCTAGTAACTGTGCTTTTACTTATAATATTAAGCACTGCTCTGGAAAGCAATGGAGAAGATGATCATGGACCGTGTAAACAGAAATCGTTGGATCCTAGGCCTCACAGTGTGTCAATCTTAGAGTTTGGGGCAGTTGGAGATGGAAAAACATTGAACACAGTTGCATTCCAAAATGCAGTTTTTTATGCCAAGTCATTTGCTGACAAAGGTGGTGCTAAACTATATGTTCCATCTGGAAAGTGGCTTACTGGAAGTTTTAACCTTACCAGCCACCTCACTTTCTTCCTTGAAAAAGGCGCAACCATCATTGCATCACAGGATTATGCACACTGGACTGCAATGGATCCCCTACCCTCCTATGGTCGAGGAATTGATGTTCCTGGTGGGAGATATCGCAGTTTGATTTATGGACAGAACTTAAGTGATGTGGTGATTACAGGTGATAATGGAATTATTGATGGGCAGGGTTCTGTTTGGTGGGACCTAATCAGTACTCATTCCTTAAATTACAGCAGACCACATATTATAGAACTTGTTGGCTCTGATAATATCATAATCTCAAATTTGACATTTTTAAACTCTCCTGCTTGGAGCATCCATCCAGTATATTGCAGTAACGTTCAAATCCTGAAGATAACAGCTCATGCACCAACCGAGTTCCCTTACACAAGCGGTATAGTTCCAGATTCTTCTGAGTATGTTTGCATTGACAACAGCAGTATTAGCACTGGTCATGATGCAATTGTGCTGAAGAGTGGTTGGGATCAATATGGAGTTGCCTATGGCAAACCAACCTCAAATGTCCACATCAGGGATGTTTATCTACAGTCGTCGTCTGGCGCTGGCCTAGCATTTGGAAGTGAGATGTCCGGAGGCATATCTGATATAATTGCAGAGCAGCTCCATATTATCAACTCAACTATTGGCATTGAACTGAAGACAACTAAGGGTAGAGGTGGCTACATGAAAAACATATTCATTTCTGATGCAAACTTGGAAAATATTTACTTGGGTATCAGTATGACGGGAAACTCTGGCTCCCATCCAGATGACAAGTATGATCCTAATGCAGTTCCGGATGTTGGTAATGTTACTTTCGCGAATGTGATTGGTGCAAATATTACTATTGCTGGGAATTTTTCAGGAATAGTTGATTCGCCTTTCACTCCTATCTGTCTTTTAAACGTGACTTTTACTACAAGTTCTGAGTCATCTCCTTCATGGTTTTGTTCTAACATAATGGGAATCTCCGAGAAGGTGTTTCCTGAGCCATGTCCTGATCTGCAGAACACGTCTTCAAACTTTTCCTCTTGCTTTTCTTCTCTACATGTGTCGTCTAGTTATGTCTCAAGCGCATGA 1368 0.4137 MKRLVTVLLLIILSTALESNGEDDHGPCKQKSLDPRPHSVSILEFGAVGDGKTLNTVAFQNAVFYAKSFADKGGAKLYVPSGKWLTGSFNLTSHLTFFLEKGATIIASQDYAHWTAMDPLPSYGRGIDVPGGRYRSLIYGQNLSDVVITGDNGIIDGQGSVWWDLISTHSLNYSRPHIIELVGSDNIIISNLTFLNSPAWSIHPVYCSNVQILKITAHAPTEFPYTSGIVPDSSEYVCIDNSSISTGHDAIVLKSGWDQYGVAYGKPTSNVHIRDVYLQSSSGAGLAFGSEMSGGISDIIAEQLHIINSTIGIELKTTKGRGGYMKNIFISDANLENIYLGISMTGNSGSHPDDKYDPNAVPDVGNVTFANVIGANITIAGNFSGIVDSPFTPICLLNVTFTTSSESSPSWFCSNIMGISEKVFPEPCPDLQNTSSNFSSCFSSLHVSSSYVSSA 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02213 455 Gene3D - 27 421 IPR012334 -
Pumo3g02213 455 PANTHER PECTIN LYASE-RELATED 9 437 - -
Pumo3g02213 455 Pfam Glycosyl hydrolases family 28 135 416 IPR000743 GO:0004650|GO:0005975
Pumo3g02213 455 Pfam Pectate lyase superfamily protein 40 98 IPR024535 -
Pumo3g02213 455 SUPERFAMILY Pectin lyase-like 28 440 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02213 Pumo-Chr3 33949880 33953189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02213 1 443 Glycoside Hydrolase AT3G16850 59.685 0.0 545
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02213 - - gmx:100801823 822.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02213 3 33949880 33953189 Pumo3g02213 3 33949880 33953189 ECH
Pumo5g03425 5 83435046 83443861 Pumo3g02213 3 33949880 33953189 PCT