Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03417 ATGACTTTTTCCCTCTTTTCTTGTCTCTTTTTCCTTCTTTCTGTCTTTTCCACCACTCTGCTCCTCCCTTGTCACTCCTTCACTCCCCATTCCCACCACCACCAGCCTCACTCTGCCACACACAACTACAGAGATGCCCTCACCAAATCCATCATGTTCTTTGAGGGCCAGAGGTCAGGGAAGCTCCCTTCTAACCAGAGGATGTCTTGGAGGAGAAACTCTGGTCTCTCTGATGGCTCAGCCATGCATGTTGATTTGGTTGGAGGGTACTACGATGCTGGGGACAATGTCAAGTTTGGCTTTCCCATGGCCTTCACCACCACCATGCTTTCGTGGAGTGTTATTGAGTTTGGTGGGGTGATGAAAGGTGAGTTGGAGAATGCCAGAGAGGCCATTCGTTGGGCCACAGATTATCTTCTCAAAGCTACTGCACATCCAGACACCATTTATGTTCAGGTGGGAGATGCTGTGAAGGACCACGCTTGTTGGGAGAGACCTGAGGACATGGATACCCCAAGGAGTGTCTTTAAAGTAGATAAGAACAACCCTGGTTCTGATGTTGCTGCAGAAACTGCTGCGGCTCTTGCAGCTGCTTCTCTGGTTTTCAAAAAAACTGACCCCACCTACTCCAAAACATTAGTTAGGAGAGCTATCCGTGTTTTCCAGTTTGCTGATAAATATAGGGGACCCTACAGCAATGGCTTGAAGCCCATTGTGTGCCCCTTCTATTGCTCTTACTCTGGTTATCAGGATGAGCTGTTGTGGGGTGCTACTTGGCTTCACAAGGCTACTAAGAACCCAATGTACCTAAACTACATTAAGGTTAATGGACAGACCCTTGGGGCTGCAGATTCTGACAATACCTTTGGATGGGATAACAAGCATGTTGGAGCAAGGATCCTGCTTTCTAAGGAATTTCTTGTTCGGAAGGTGCAAACCCTGCATGACTACAAGGGTCACGCGGACAATTTTATCTGTTCTGTTATCCCCGGCTCCTCTTCTGCCCAATTCACCCCAGGTGGTCTTCTATTCAAGATGAGTGATAGCAACATGCAATATGTCACTTCCACCTCCTTCATACTCTTAGCTTATGCTAAATACTTGACCAAAGCCCATGTGGTTGTGAACTGTGGTGGAAGTGGAACCATAGTAACTCCAAAGAGACTTCGGACTATAGCCAAAAAACAGGTGGATTACTTGCTAGGAGACAACCCCTTGAAGATGTCCTATATGGTAGGGTATGGTCCACGGTACCCTCGAAGGATACACCACAGGGGGTCATCGCTTCCGTCGATTGCCGTTCACCCTGGCAAGATCCAATGCTCAGCAGGTTTCAGTGTGATGAACTCAGAATCACCCAACCCCAACATTCTAGTGGGTGCCGTTGTTGGAGGGCCGGATCTGAATGATAGGTTCCCAGATGAACGGTCAGATTATGAGCAATCAGAACCAGCTACTTATATCAACGCACCACTTGTAGGAGCACTTGCTTATCTCGCACACTCCTTTGGCCAACTCTAG 1521 0.4799 MTFSLFSCLFFLLSVFSTTLLLPCHSFTPHSHHHQPHSATHNYRDALTKSIMFFEGQRSGKLPSNQRMSWRRNSGLSDGSAMHVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGGVMKGELENAREAIRWATDYLLKATAHPDTIYVQVGDAVKDHACWERPEDMDTPRSVFKVDKNNPGSDVAAETAAALAAASLVFKKTDPTYSKTLVRRAIRVFQFADKYRGPYSNGLKPIVCPFYCSYSGYQDELLWGATWLHKATKNPMYLNYIKVNGQTLGAADSDNTFGWDNKHVGARILLSKEFLVRKVQTLHDYKGHADNFICSVIPGSSSAQFTPGGLLFKMSDSNMQYVTSTSFILLAYAKYLTKAHVVVNCGGSGTIVTPKRLRTIAKKQVDYLLGDNPLKMSYMVGYGPRYPRRIHHRGSSLPSIAVHPGKIQCSAGFSVMNSESPNPNILVGAVVGGPDLNDRFPDERSDYEQSEPATYINAPLVGALAYLAHSFGQL 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03417 506 Gene3D - 38 506 IPR012341 GO:0005975
Pumo5g03417 506 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 472 490 IPR033126 -
Pumo5g03417 506 FunFam Endoglucanase 39 504 - -
Pumo5g03417 506 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 399 425 IPR018221 -
Pumo5g03417 506 SUPERFAMILY Six-hairpin glycosidases 40 504 IPR008928 GO:0005975
Pumo5g03417 506 PANTHER ENDO-1,4-BETA-GLUCANASE 19 501 - -
Pumo5g03417 506 Pfam Glycosyl hydrolase family 9 43 496 IPR001701 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03417 Pumo-Chr5 83333131 83335378 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03417 31 502 Glycoside Hydrolase AT1G02800 79.449 0.0 774
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03417 K01179 - gmx:100793900 934.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03417 5 83333131 83335378 Pumo5g03417 5 83333131 83335378 ECH
Pumo5g03417 5 83333131 83335378 Pumo3g02222 3 34052967 34055772 PCT