Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02222 ATGACTTTCTCCCTTCCCTTCACCACTCTGCTTTCCCTGTTCTCTCTCATTCTCCTACATGGCCATGCCTTCCCAGTCCATTACAATCACCCCATACACCATCGCCACCCTCGCTTTGCCACTCATAACTACAGAGATGCTCTCACCAAATCCATTCTCTTCTTTGAAGGCCAGAGGTCAGGGAGGCTCCCTTCCAACCAGAGAATGTCTTGGAGGAGGGACTCTGGCCTCTCTGATGGCTCAGCCATGCATGTTGATTTGGTTGGAGGCTACTATGATGCTGGGGACAATGTCAAATTTGGTTTTCCCATGGCCTTCACCACCACCATGCTTTCATGGAGCGTTATTGAGTTTGGTGGGATGATGAAAGGTGAGTTGCAGAATGCCAGAGAGGCCATTCGCTGGGGTACTGATTATCTTCTCAAAGCTACTGCACATCCAAACACCATTTATGTTCAGGTGGGGGATGCTAAGAAGGACCACGCTTGTTGGGAGAGGCCAGAGGACATGGACACTCCAAGAAGCGTGTTTAAAATAGATGCAAACACACCTGGTTCAGAAGTTGCCGCGGAAACTGCTGCAGCTCTTGCAGCTGCTTCTCTGGTTTTTAGAAGAAGTGACCCCACTTACTCCAGAATTTTAGTGAGGAGAGCCATCAGGGTCTTCCAGTTTGCTGATAAGTACAGGGGATCCTACAGCAATGCCTTGAAACCCTTTGTGTGCCCCTTCTATTGCTCTTACTCTGGATATCAGGATGAGCTGTTGTGGGGTGCTGCCTGGCTGCACAAGGCTACCAAGAATCCAATGTACCTAAACTACATTAAAGTTAATGGTCAGATCCTTGGGGCTGCAGAGTTTGACAACACCTTTGGGTGGGATAACAAGCATGCTGGAGCAAGAATACTTCTTTCCAAGGAATTCCTGGTTCAAAGGGTACAATCCCTCCATGACTACAAGGGGCATGCGGACAATTTCGTCTGTTCTCTAATTCCTGGGACCTCTTTCTCTTCCACCCAATATACCCCAGGTGGCCTTCTTTTCAAGATGAGTGATAGCAACATGCAGTATGTCACATCCACCTCCTTCCTACTACTAACATATGCCAAATACTTGACCCAAGCCCATATGGTTGTTAACTGTGGTGGAATCACAGTAACCCCAAGGAGACTCCGGACAATAGCTAAGAAACAGGTGGATTACTTGCTTGGAGACAACCCATTGAAGATGTCGTACATGGTGGGGTATGGTCCACGATACCCACGAAGGATACACCATAGGGGCTCATCTCTACCGTCCATTGCTGTACACCCGGGAAAGATCCAGTGTTCTGTAGGGTTCAGTGTGATGAATTCGCAATCCCCCAACCCAAACATTCTAGTGGGGGCCATTGTTGGTGGACCAGACCAGCACGATAGGTTCCCAGATCAGCGGTCAGATTATGAGCAATCAGAGCCAGCTACATACATTAACTCACCCCTTGTAGGAGCACTGGCGTATCTTGCACACTCATTTGGTCAACTCTAG 1524 0.4856 MTFSLPFTTLLSLFSLILLHGHAFPVHYNHPIHHRHPRFATHNYRDALTKSILFFEGQRSGRLPSNQRMSWRRDSGLSDGSAMHVDLVGGYYDAGDNVKFGFPMAFTTTMLSWSVIEFGGMMKGELQNAREAIRWGTDYLLKATAHPNTIYVQVGDAKKDHACWERPEDMDTPRSVFKIDANTPGSEVAAETAAALAAASLVFRRSDPTYSRILVRRAIRVFQFADKYRGSYSNALKPFVCPFYCSYSGYQDELLWGAAWLHKATKNPMYLNYIKVNGQILGAAEFDNTFGWDNKHAGARILLSKEFLVQRVQSLHDYKGHADNFVCSLIPGTSFSSTQYTPGGLLFKMSDSNMQYVTSTSFLLLTYAKYLTQAHMVVNCGGITVTPRRLRTIAKKQVDYLLGDNPLKMSYMVGYGPRYPRRIHHRGSSLPSIAVHPGKIQCSVGFSVMNSQSPNPNILVGAIVGGPDQHDRFPDQRSDYEQSEPATYINSPLVGALAYLAHSFGQL 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02222 507 Pfam Glycosyl hydrolase family 9 44 497 IPR001701 GO:0004553|GO:0005975
Pumo3g02222 507 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 473 491 IPR033126 -
Pumo3g02222 507 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 400 426 IPR018221 -
Pumo3g02222 507 FunFam Endoglucanase 40 505 - -
Pumo3g02222 507 Gene3D - 40 507 IPR012341 GO:0005975
Pumo3g02222 507 PANTHER ENDO-1,4-BETA-GLUCANASE 31 502 - -
Pumo3g02222 507 SUPERFAMILY Six-hairpin glycosidases 41 505 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02222 Pumo-Chr3 34052967 34055772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g02222 1 503 Glycoside Hydrolase AT1G02800 75.000 0.0 772
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02222 K01179 - gmx:100777718 983.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02222 3 34052967 34055772 Pumo3g02222 3 34052967 34055772 ECH
Pumo5g03417 5 83333131 83335378 Pumo3g02222 3 34052967 34055772 PCT