Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03358 ATGGGAGTGGTAACCGTTGGTGAATTGAAGCCTAGCATTTCAGGAAAAAGGACCTTTCGTCCAAGTTCAAGCATAAGACATGCCACTGAATGGCCAATATCTGACGTCTCTAGTGATCTTACCATCGAAGTTGGAGCATCAACCTTCGCACTTCACAAGTTTCCTCTCGTTTCTCGGAGTGGAAGAATTCGGAAGCTGCTGTTAGAAGCAAAAGATTCAAAAGTTTTACGCGTAAGTCTCCCAAATGTGCCAGGTGGTGCAGAGGCATTTGAGCTAGCTGCCAAGTTTTGCTATGGAATCAATGTTGAGTTCACCCTCTCAAATGTGGCTTTGCTACGTTGCACGGCCCATTTTCTTGAAATGACCGAAGAATTTGCAGAAAAAAACTTAGAGGCCAGAGTTGAAGCATATCTAAGGGACACAGTGCTCCCTAACATATCAAGCACAGTATATGTTCTCCACTGTTGTGAGGCTCTTCTTCCCATCTCAGAGGAAATAAACCTTGTCAATAAGCTAATCAATGCAATTGCAAACAACGCGTGCAAAGAGCAGCTTACAACTGGTTTACTAAAACTCGATCACACTTTCCCTTCTAAAACCACACCAACCATGGAACCAGAAACACCCTCAGATTGGTGGGGGAAGTCTTTCAATGTTCTTAGTCTTGAGTTCTTCCAACGAGTTGTGTCTGTTGTGAAGTCAAAGGGACTAAAACAAGACATGATCAGCAAAATTTTGATAAACTATGCTCATGGTTCTCTTCAGGGGATTGGTGTTAGAGATCCCCAAGTGGTGAAGGGAAGTCTTCATGACTTGGAATTGCAAAAGAAACAAAGGGTTGTTGTTGAAACCATAGTTGGGTTACTCCCAACTCACTCAAGAAAAAGCCCGGTTCCAATGGGATTCCTCTCAAGTTTGTTGAAGGCTGCAATAGCAGCATCTGCATCAACTCCTTGCAGATCTGACTTGGAGAGGCGAATTAGTCTACAACTTGACCAGGCAATTCTTGAAGACATCTTAATCCCAACAAACTCACCTCAAAACACCCACAACACAATGTATGACACAGACTCAATTCTGAGGATCTTTTCTATTTATCTTAACATGGACGAGGAGGACGGTGAAGATAGTGATAACTACATTGATGAGAGCCAAATGGTGTATGATTTTGACAGCCCTGGATCTCCAAAACAAAGCTCAATCATAAAGGTATCCAAATTACTGGACAGTTATCTCGCTGAAGTAGCACTAGACTCAAACTTGTTGCCTTCAAAATTCACAGCACTTGCAGAACTGCTTCCAGATCATGCACGTATCGTGAGTGATGGACTCTATAGAGCTGTTGACATCTTCCTTAAGGTTCATCCAAACATGAAGGACTCAGAGAGGTACCGGTTATGCAAAACCATAGATTGTCAGAAACTGTCTCAAGAAGCATGCAGCCATGCAGCACAGAATGAAAGGCTACCAGTGCAGATGGTGGTTCAAGTTCTCTACTTCGAGCAAATGAGGCTTCGCAATGCCATGAATGGAGGGCACAACCAATTCTTCTTCGGTCAGTTCCCTCACCGTTCAGGGAGTGGTGCAGGAAGTGGAGCCATTTCCCCCAGAGACAACTATGCATCGGTTAGAAGAGAGAACAGAGAACTGAAGCTTGAAGTTGCAAGAATGAGAATGAGGCTCACTGACTTGGAGAAAGACCACGTGTCTATGAAGCAGGAGCTTGTTAAGTCTCACCCTGCCAACAAGTTGTTCAAATCATTCACCAGAAAGCTGAGCAAGCTAAATTCTCTATTCAGGATAAATAGCATTAAGCCAATTGGTGGCAAAGCTAGTTCAGAAACTCGCTTCCCTTTTCCAAAGCGAAGACGCCACTCCGTTTCATGA 1887 0.4372 MGVVTVGELKPSISGKRTFRPSSSIRHATEWPISDVSSDLTIEVGASTFALHKFPLVSRSGRIRKLLLEAKDSKVLRVSLPNVPGGAEAFELAAKFCYGINVEFTLSNVALLRCTAHFLEMTEEFAEKNLEARVEAYLRDTVLPNISSTVYVLHCCEALLPISEEINLVNKLINAIANNACKEQLTTGLLKLDHTFPSKTTPTMEPETPSDWWGKSFNVLSLEFFQRVVSVVKSKGLKQDMISKILINYAHGSLQGIGVRDPQVVKGSLHDLELQKKQRVVVETIVGLLPTHSRKSPVPMGFLSSLLKAAIAASASTPCRSDLERRISLQLDQAILEDILIPTNSPQNTHNTMYDTDSILRIFSIYLNMDEEDGEDSDNYIDESQMVYDFDSPGSPKQSSIIKVSKLLDSYLAEVALDSNLLPSKFTALAELLPDHARIVSDGLYRAVDIFLKVHPNMKDSERYRLCKTIDCQKLSQEACSHAAQNERLPVQMVVQVLYFEQMRLRNAMNGGHNQFFFGQFPHRSGSGAGSGAISPRDNYASVRRENRELKLEVARMRMRLTDLEKDHVSMKQELVKSHPANKLFKSFTRKLSKLNSLFRINSIKPIGGKASSETRFPFPKRRRHSVS 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03358 628 Pfam BTB/POZ domain 37 123 IPR000210 GO:0005515
Pumo5g03358 628 ProSiteProfiles BTB domain profile. 38 106 IPR000210 GO:0005515
Pumo5g03358 628 ProSiteProfiles NPH3 domain profile. 211 504 IPR027356 -
Pumo5g03358 628 Pfam NPH3 family 211 480 IPR027356 -
Pumo5g03358 628 SUPERFAMILY POZ domain 22 123 IPR011333 -
Pumo5g03358 628 Gene3D Potassium Channel Kv1.1; Chain A 26 142 IPR011333 -
Pumo5g03358 628 PANTHER OS12G0117600 PROTEIN 34 582 IPR043454 -
Pumo5g03358 628 Coils Coil 540 574 - -
Pumo5g03358 628 FunFam BTB/POZ domain-containing protein At1g03010 16 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03358 Pumo-Chr5 82707927 82712408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03358 1 454 EF-hand Containing Proteins AT2G47860 59.588 0.0 547
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03358 - - gmx:100776688 1176.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03358 5 82707927 82712408 Pumo5g03358 5 82707927 82712408 ECH
Pumo5g03358 5 82707927 82712408 Pumo3g02267 3 34706433 34711383 PCT