Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03345 ATGCAGAGAATGGCGTACACGTTTTCGTTTCCGGAGGAGGTGCTGGAGCATGTGTTCTCGTTCATTCCGAGCGAGAGGGACCGGAACGCGATCTCGCTGGTGTGCAAGTCGTGGTACGAGATCGAGCGGTGGTGCAGGAGGAAGGTGTTCGTGGGGAACTGCTACGCTGTGAGCCCTATGATGGTGATCAAGCGGTTCCCGGAGCTGAGATCCATTGCGCTCAAAGGGAAGCCGCACTTCGCCGACTTCAATTTGGTACCCGAGGGTTGGGGCGCTTACGTCTATCCCTGGATCGCCGCCATGGCCTGCGCCTTGCCCTGCCTCGAAGAGATCAGGCTCAAGAGGATGGTCATCACCGACGACAGCTTGGAACTCATCGCTAAGTCCTTCAAAAACTTCAAGGTCTTGGTTCTCACTTCGTGTGAGGGTTTTACCACTGATGGACTTGCCGCCATTGCTGCCAACTGCAGGAATTTGAGGGAGTTAGACTTGCAGGAGAGTGAAGTGGAGGACCTCAGTGGGCACTGGCTAAGCCATTTTCCTGATTCCTACACGTCATTAGTTTCACTTAACATCTCTTGCTTAAACAATGAGGTGAGTTTATCTGCACTAGAGCGTCTGCTTGGGAGGTGTCCCAACCTGCAGACCCTCCGCCTCAATCGTGCTGTGCCCCTTGATAGACTACCCAATCTACTTAGCCGGTGTCCTCAGCTGGTTGAGTTAGGCACAGGAGTCTACTCAACTGAGATGCGACCAGAGGTCTTCTCAAACCTGGAAGCGGCATTTTCTGGGTGCAAGCAGTTGAAGAGCTTGTCTGGCTTTTGGGATGTGCTCCCATCCTACCTTCCAGCTGTCTACCCCATCTGCTCCAGGCTAACATCACTAAACTTGAGTTATGCTGTTATTCAAAGCTCTGATCTTATTAAGCTTATCAGTCAGTGCCCAAATTTGTTGCGGTTATGGGTGCTGGATTACATAGAAGATGCTGGTCTTCATGCCCTTGCTGCATCATGTAAGGATCTAAGGGAGTTAAGGGTGTTTCCGTCTGACCCATTTGGTTTAGAACCAAATGTTGCATTGACAGAACAGGGCCTTGTCTCTGTGTCTGAAGGTTGCCCCAAGCTCCAATCAGTTCTATATTTTTGTCGTCAAATGTCTAATGCAGCCCTACATACAATTGCGCGGAACAGGCCTAATATGACTCGTTTTCGGCTTTGTATTATTGAGCCTCGAACTCCTGACTATCTTACCCATGAACCCCTGGATTCCGGTTTTGGAGCTATTGTAGAGCATTGCAAGGATCTTCAACGCCTATCCCTTTCTGGTCTTCTTACTGATCGTGTTTTTGAGTATATTGGGACTTATGGGAAGAAGCTGGAGATGCTATCTGTGGCTTTTGCTGGAGATAGTGATTTGGGACTTCATCATGTGCTGTCTGGGTGCGATAATCTTAGGAAGCTGGAGATCAGGGACTGCCCCTTTGGTGACAAGGCCCTTTTGGCAAATGCTGAAAAGCTGGAGACAATGCGATCCCTTTGGATGTCCTCCTGCTCAGTGAGTTATGGAGCATGTAAGCTACTGGGTCAGAAAATGCCCAGGCTCAACGTTGAAGTCATTGATGAAAGAGGACCTCCAGATTCAAGGCCAGATAATTGTCCTGTTGAGAAGCTTTATATATACAGGACTGTTGCCGGGCCAAGGTTGGACATGCCTGGTTTTGTGTGGACAATGGAAGATGATTCTTCGCTGAGGCTTGAGTGA 1761 0.4957 MQRMAYTFSFPEEVLEHVFSFIPSERDRNAISLVCKSWYEIERWCRRKVFVGNCYAVSPMMVIKRFPELRSIALKGKPHFADFNLVPEGWGAYVYPWIAAMACALPCLEEIRLKRMVITDDSLELIAKSFKNFKVLVLTSCEGFTTDGLAAIAANCRNLRELDLQESEVEDLSGHWLSHFPDSYTSLVSLNISCLNNEVSLSALERLLGRCPNLQTLRLNRAVPLDRLPNLLSRCPQLVELGTGVYSTEMRPEVFSNLEAAFSGCKQLKSLSGFWDVLPSYLPAVYPICSRLTSLNLSYAVIQSSDLIKLISQCPNLLRLWVLDYIEDAGLHALAASCKDLRELRVFPSDPFGLEPNVALTEQGLVSVSEGCPKLQSVLYFCRQMSNAALHTIARNRPNMTRFRLCIIEPRTPDYLTHEPLDSGFGAIVEHCKDLQRLSLSGLLTDRVFEYIGTYGKKLEMLSVAFAGDSDLGLHHVLSGCDNLRKLEIRDCPFGDKALLANAEKLETMRSLWMSSCSVSYGACKLLGQKMPRLNVEVIDERGPPDSRPDNCPVEKLYIYRTVAGPRLDMPGFVWTMEDDSSLRLE 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03345 586 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 88 538 - -
Pumo5g03345 586 CDD F-box_AtTIR1-like 9 46 - -
Pumo5g03345 586 SMART fbox_2 10 51 IPR001810 GO:0005515
Pumo5g03345 586 Pfam Transport inhibitor response 1 protein domain 67 113 IPR041101 -
Pumo5g03345 586 Pfam F-box 8 48 IPR041567 -
Pumo5g03345 586 SUPERFAMILY F-box domain 3 41 IPR036047 GO:0005515
Pumo5g03345 586 FunFam Transport inhibitor response 1 6 46 - -
Pumo5g03345 586 SMART LRR_CC_2 372 396 IPR006553 -
Pumo5g03345 586 SMART LRR_CC_2 481 505 IPR006553 -
Pumo5g03345 586 SMART LRR_CC_2 289 313 IPR006553 -
Pumo5g03345 586 SMART LRR_CC_2 314 337 IPR006553 -
Pumo5g03345 586 SMART LRR_CC_2 432 455 IPR006553 -
Pumo5g03345 586 SMART LRR_CC_2 105 129 IPR006553 -
Pumo5g03345 586 SMART LRR_CC_2 130 155 IPR006553 -
Pumo5g03345 586 FunFam Transport inhibitor response 1 47 577 - -
Pumo5g03345 586 Gene3D Ribonuclease Inhibitor 47 577 IPR032675 -
Pumo5g03345 586 Gene3D - 3 46 - -
Pumo5g03345 586 SUPERFAMILY RNI-like 33 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03345 Pumo-Chr5 82578887 82582682 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03345 K14485 - gmx:100779021 1144.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03345 5 82578887 82582682 Pumo5g03345 5 82578887 82582682 ECH
Pumo5g03345 5 82578887 82582682 Pumo3g02274 3 34812756 34816261 PCT