Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g02274 ATGCGGCCGAGAGTAGCGTACTCGTTCCCTGAGGAGGTGCTGGAGCACGTGTTCTCCTTCATCGAGTGCGACAAGGACCGCGGCTCGATCTCCCTCGTCTGCAAGTCCTGGTACGAGATCGAGCGATGGTGCCGCCGGAGAGTCTTCGTCGGAAACTGCTACGCCGTCTCTCCGGCCACCGTCGTCAAGCGCTTCCCCAAGGTCAGATCCATCGCCATCAAGGGGAAGCCGCACTTCGCCGACTTCAATTTGGTTCCCGAAGGCTGGGGCGCCTACGTGGGCCCCTGGATCAAGGCCATGGCCGCTGCCTACCCTTGGCTTCAGGAGATCAGGCTCAAGAGGATGGTCATCACTGATGAATGCTTGGAACTCATCGCCAAATCGTTTAAGAACTTCCAAGTGTTGGTCCTCTCCTCTTGCGAGGGTTTCACCACTGATGGACTTGCTGCCATTGCCGCCAATTGCAGGAATTTGAGAGAGTTGGAGTTGCGGGAGAGTGAGGTGGACGACATTTGTGGGCATTGGCTGAGCCATTTTCCTGATTCGTACACATCGCTGGTTTCCCTTAACATTTCTTGCTTAGGCAATGAGGTGAATTTGTCTGCCCTAGAGCGTCTGGTTAGTAGGTGTCCCAATCTGCAGACTCTCCGCCTCAACCGCACTGTGCCCCTAGACAGGTTGGCCAACCTCCTTCGCGGAGCTCCTCAGTTGGTTGAGTTGGGCACAGGAGCTTACACGACTGAGATGCGACCGGAGGTCTTCGCAAACCTCGCGGAAGCATTTTCAGGGTGCAAGCAATTGAAGAGCTTGTCTGGCTTCTGGGACGTGCTCCCGTCCTACCTTCCAGCTGTCTATCCTGTCTGCTCCAGCCTGACATCACTGAACTTGAGTTATGCAACTATTCAAAGCCCTGATCTTATCAAGCTTGTTGGTCAATGTGAGAGTTTGCAGCGTTTATGGGTGCTGGATTACATAGAAGATGCTGGCCTCGAAGTGATTGCTGCATCGTGTAAGGATCTGAGGGAGTTGAGGGTGTTTCCGTCTGACCCATTTGGGTTAGAGCCAAATGTAGCGTTGACAGAGCAGGGCCTTGTTTCTGTGTCTGAAGGCTGCACCAAGCTCCAGTCAGTTCTATATTTTTGTCGTCAAATGTCTAATGCTGCCTTAAATACAATTGCCAGGAACAGGCCTAATATGACACGTTTTAGACTATGTATTATCGAGCCTCGAGCTCCTGACTACCTTACCCATCAACCTCTGGATACTGGTTTTGGAGCTATTGTAGAGCATTGCACGGATCTTAGGCGCCTTTCCCTTTCCGGGCTTCTTACTGACCGTGTTTTTGAGTATATTGGGACTTATGGTAAGAAGCTTGAGATGCTTTCTGTGGCTTTTGCTGGAGATAGCGATTTGGGACTCCATCATGTGCTGTCTGGGTGTGACAACCTTAGGAAGCTGGAGATCAGGGACTGCCCCTTTGGTGACAAAGCCCTTTTGGCCAATGCTGCAAAGCTGGAGACAATGCGATCCCTTTGGATGTCCTCTTGCTTGGTGAGTTATGGAGCATGTAAACTGCTGGGTCAGAAAATGCCAAGACTTAATGTTGAAGTCATTGATGAAAGAGGACCTCCAGATTCAAGGCCAGAGAGTAGCCCTGTTGAGAAGCTATACGTATACAGGACTGTTTCTGGGCCAAGATCGGACATGCCAGGCTATGTATGGAGAATGGAAGATGATTCTGCATTAAGGATTTCTTGA 1758 0.5119 MRPRVAYSFPEEVLEHVFSFIECDKDRGSISLVCKSWYEIERWCRRRVFVGNCYAVSPATVVKRFPKVRSIAIKGKPHFADFNLVPEGWGAYVGPWIKAMAAAYPWLQEIRLKRMVITDECLELIAKSFKNFQVLVLSSCEGFTTDGLAAIAANCRNLRELELRESEVDDICGHWLSHFPDSYTSLVSLNISCLGNEVNLSALERLVSRCPNLQTLRLNRTVPLDRLANLLRGAPQLVELGTGAYTTEMRPEVFANLAEAFSGCKQLKSLSGFWDVLPSYLPAVYPVCSSLTSLNLSYATIQSPDLIKLVGQCESLQRLWVLDYIEDAGLEVIAASCKDLRELRVFPSDPFGLEPNVALTEQGLVSVSEGCTKLQSVLYFCRQMSNAALNTIARNRPNMTRFRLCIIEPRAPDYLTHQPLDTGFGAIVEHCTDLRRLSLSGLLTDRVFEYIGTYGKKLEMLSVAFAGDSDLGLHHVLSGCDNLRKLEIRDCPFGDKALLANAAKLETMRSLWMSSCLVSYGACKLLGQKMPRLNVEVIDERGPPDSRPESSPVEKLYVYRTVSGPRSDMPGYVWRMEDDSALRIS 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g02274 585 SUPERFAMILY F-box domain 7 43 IPR036047 GO:0005515
Pumo3g02274 585 Pfam Leucine Rich repeat 288 309 IPR001611 GO:0005515
Pumo3g02274 585 FunFam Transport inhibitor response 1 5 45 - -
Pumo3g02274 585 SMART LRR_CC_2 371 395 IPR006553 -
Pumo3g02274 585 SMART LRR_CC_2 104 128 IPR006553 -
Pumo3g02274 585 SMART LRR_CC_2 129 154 IPR006553 -
Pumo3g02274 585 SMART LRR_CC_2 431 454 IPR006553 -
Pumo3g02274 585 SMART LRR_CC_2 480 504 IPR006553 -
Pumo3g02274 585 CDD F-box_AtTIR1-like 8 45 - -
Pumo3g02274 585 Gene3D - 1 45 - -
Pumo3g02274 585 Gene3D Ribonuclease Inhibitor 46 576 IPR032675 -
Pumo3g02274 585 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 87 537 - -
Pumo3g02274 585 Pfam F-box 7 47 IPR041567 -
Pumo3g02274 585 FunFam Transport inhibitor response 1 46 576 - -
Pumo3g02274 585 SUPERFAMILY RNI-like 33 534 - -
Pumo3g02274 585 SMART fbox_2 9 50 IPR001810 GO:0005515
Pumo3g02274 585 Pfam Transport inhibitor response 1 protein domain 66 112 IPR041101 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g02274 Pumo-Chr3 34812756 34816261 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g02274 K14485 - gmx:100809794 1143.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g02274 3 34812756 34816261 Pumo3g02274 3 34812756 34816261 ECH
Pumo5g03345 5 82578887 82582682 Pumo3g02274 3 34812756 34816261 PCT