Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03308 ATGATGCCGAAACCCATGAACGTTTTGACGACAAAGCCCTCACCTTTGAGCACCATGGTGGTGCTGCTGATCCTCTGCATTCTGGGTTTCTACGCTCTGCATTTCCCTCACTCTTCCACACCTTCTTCTACTTCCCAAAACCTCTCTCACTTAGAAAAACTTTTTCTTTCCACTTCCTCAAACTCCACTATTTCTTCCTACCTCCGCGCCCTCACCGTGCACCCTCACCTCGCCGGAACAAAACCCGCCTCCGACACCACGCGCTACGTGCTCAACCACTTCACTTCATTGGGCCTACAGGCCCATACAACGACCTACACCACTCTCCTCTCCTTCCCGGTGCGCTCCTCCCTCTCGGCGCATTTTAGCGACGGCTCTTCGGCGAGCCTCCGGCTCACCGAAGCGTCCGGGGCGGGGGTGGTGCCGGCGTACCACGCGTACTCGCCGTCGGGTGCGGTGCACGCGCGGGCGGTGTTCGCGAACTACGGGAGGGAGAGGGACTACCGCGCGCTGGCGGCGATGGGGGTGAACGTGAGCGGGTGCGTGGTGGTGGTGCGGAAGGGCGGGGAGATGGGGCGGGGCGCGGTGGTGGAGAGGGCGGAGAAGAACGGCGCGGCGGCGGTGCTGGTTTACGGCGAGGGTGACACGTGGCGGAAGGGGTTTGAGAGGGGTAACGTGATGAGGGGGATAGGGGACCCACTTACTCCAGGGTGGGCTGGGGTTGAGGGTGGTGAGACACTGGGATTGGAAGATAGTGAGGTTTTGAAAAGGTTTCCCAAAATTCCCTCTATGCCCTTGTCAGCTGAGGTGGCTGACACTATTTTGTCCTCGCTTGGGGGGGTTCCCGTGCCCCTTGAATGGAGGGGTACCCTAAGGTCTAAGGTCAGGCATGTTGGTCCTGGCCCCACCATGCTCAATTTCACTTACCAGGGTGAAAAGAAGGTGGCCACCATTCAAAATGTTTTTGCTGTCATAAAGGGATCAGAAGAACCTGATCGATATGTTCTGCTTGGGAACCATAGAGATGCATGGACGTATGGTGCTGTTGATCCCAGCAGTGGGACAGCTGCACTACTCGACATTGCTCGTCGATTTTCTGCTCTGTTGAGCTTGGGGTGGAAGCCAAGGAGGACAATCATTCTCTGCAGTTGGGATGCAGAGGAATTTGGGATGATAGGATCCACTGAGTGGGTTGAACAAAACCTTATTAATCTGGGTTCCAAAGCTGTAGCATACCTTAATGTGGACAGTGCTGTGCAAGGTCCTGGTTTCTTTGTTGGTTCAACTCCTCAGCTAGACAGTCTTATTCTTGAGGTCGCAAAAAAGGTCAAGGATCCTGACTCTGAGGGTGTATCGTTATATGAGAATTGGGCTGCTGCTCGTGGAGGCAATAATATTCAGAGGCTCAGTGGAGTTGATTCTGATTTCGCTCCATTTGTGCAACACGCAGGGGTTCCATCCATTGATATGTATTATGGAAGAGATTTTCCTGTCTATCACACTGCGTTCGACTCCTATAACTGGATGGCAGAGTATGGAGATCCATTCTTCCACCGCCATGTTGCTGTTACTGGAGTTTGGGGGCTTCTAGCTCTCCACTTGGCTGATGATCCCGTTCTTCCTTTCAATTACGTTTCATATGCAAATGAGTTACAGTTGTACAAAAACATGTTGAGCAACTTGATAGACCAAAAAATTTCTCTACATCCATTAACTCTTTCAATTGAAGAATTTGCTTCTGCTGCCAAAGAAGCTGACGATGAATTAAAGAAACTGAGATTGCAAGAAACTGAAGGTTGTTCTGTAGATATGAAAAAGCGAGCATTGAATGATAGACTAATGCTTGCAGAAAAAGGCTTCCTGGATGCAGATGGACTTCAAGGAAGGCAATGGTTCAAGCATCTCGTATTTGGGCCTTCCAGCAACCATGAAAGGCTAAATTTCTTCCCAGGGATTTCTGATTCTACCACTGTGTTGAAGGGTGTAAGTGAAAGAGAAAGGCTAGCATCAATTCAACACGAGATATGGAGGGTTGCCAGAGCCATTCGAAGAGCTTCTTCAGCACTCAGAGGAGAATTCACCTAA 2085 0.5113 MMPKPMNVLTTKPSPLSTMVVLLILCILGFYALHFPHSSTPSSTSQNLSHLEKLFLSTSSNSTISSYLRALTVHPHLAGTKPASDTTRYVLNHFTSLGLQAHTTTYTTLLSFPVRSSLSAHFSDGSSASLRLTEASGAGVVPAYHAYSPSGAVHARAVFANYGRERDYRALAAMGVNVSGCVVVVRKGGEMGRGAVVERAEKNGAAAVLVYGEGDTWRKGFERGNVMRGIGDPLTPGWAGVEGGETLGLEDSEVLKRFPKIPSMPLSAEVADTILSSLGGVPVPLEWRGTLRSKVRHVGPGPTMLNFTYQGEKKVATIQNVFAVIKGSEEPDRYVLLGNHRDAWTYGAVDPSSGTAALLDIARRFSALLSLGWKPRRTIILCSWDAEEFGMIGSTEWVEQNLINLGSKAVAYLNVDSAVQGPGFFVGSTPQLDSLILEVAKKVKDPDSEGVSLYENWAAARGGNNIQRLSGVDSDFAPFVQHAGVPSIDMYYGRDFPVYHTAFDSYNWMAEYGDPFFHRHVAVTGVWGLLALHLADDPVLPFNYVSYANELQLYKNMLSNLIDQKISLHPLTLSIEEFASAAKEADDELKKLRLQETEGCSVDMKKRALNDRLMLAEKGFLDADGLQGRQWFKHLVFGPSSNHERLNFFPGISDSTTVLKGVSERERLASIQHEIWRVARAIRRASSALRGEFT 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03308 694 Gene3D - 116 311 - -
Pumo5g03308 694 Pfam Peptidase family M28 320 507 IPR007484 -
Pumo5g03308 694 Pfam Transferrin receptor-like dimerisation domain 566 689 IPR007365 -
Pumo5g03308 694 Gene3D - 544 694 IPR036757 -
Pumo5g03308 694 SUPERFAMILY Transferrin receptor-like dimerisation domain 530 693 IPR036757 -
Pumo5g03308 694 SUPERFAMILY Zn-dependent exopeptidases 60 540 - -
Pumo5g03308 694 FunFam Os01g0740650 protein 311 541 - -
Pumo5g03308 694 PANTHER N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE 17 691 IPR039373 -
Pumo5g03308 694 SUPERFAMILY PA domain 109 322 IPR046450 -
Pumo5g03308 694 CDD M28_PSMA_like 316 542 - -
Pumo5g03308 694 Gene3D Zn peptidases 62 541 - -
Pumo5g03308 694 Coils Coil 575 595 - -
Pumo5g03308 694 FunFam N-acetylated-alpha-linked acidic dipeptidase 2 542 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03308 Pumo-Chr5 82258791 82263880 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03308 K01301 - gmx:100798131 1275.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03308 5 82258791 82263880 Pumo5g03308 5 82258791 82263880 ECH
Pumo5g03308 5 82258791 82263880 Pumo3g02950 3 52638515 52645870 PCT