Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03251 ATGGAGGAGTATATCACTAAGAAGTGTTCCTCTGGCAATTGTAATGAGAAGAAGCTCTTTTCTCTCACACTGCATTCACTTTCCTCCAACCCCGACACCATCACTCTCCCTCTCTCCCCATTACTTACCAAACCCCATTCCTCATCAGATCCATTCCACTCTCTCAAACTCGCCGCTTCCGCTTCCCTAACCCGGGCCCACCACCTCAAGCACCGCAACAACGATGCCCCCTCCGTAGCCACAACCCCAGCGTACCCCAAATCCTACGGAGGCTACTCCATAGATCTAAACTTCGGAACCCCACCCCAAACCTCCCCCTTCGTTCTCGACACAGGTAGCAGCCTCGTCTGGTTCCCCTGCACCTCCCGCTACCTCTGCTCCCACTGCAACTTCCCAAACATCGACCCCACCAAAATCCCCACCTTCATTCCCAAAAACTCCTCCACCGCCAAACTCCTCGGTTGCAGAAACCCCAAATGCGGCTACCTCTTCGGCCCCCAAGTCCAATCTCGCTGCCCCCGATGCAAACCAGAATCCCAAAACTGTTCTCCCACGTGCCCCGCTTACATTATCCAATACGGCCTAGGCTCCACCGCAGGCTTCTTACTCCTCGACAATCTCAATTTCCCGGGAAAAATCGTCCCCCAATTTCTCGTCGGCTGCTCCATCCTCTCCATTCGCCAACCCTCCGGAATCGCCGGCTTCGGACGCGGCCAAGAGTCTCTCCCCTCGCAGATGAATCTCAAGAGATTCTCTTACTGCTTAATTTCCCACCGCTTCGACGATACACAACAAAACAGCGACCTCCTTCTGCAAATTAGCTCCACCGGGGACACCAAAACTAACGGCCTCAGCTACACGCCGTTTCGCTCAAACCCCTCCACCAACAACTCCGCCTTCAAAGAGTATTACTATCTTACCCTCCGCAAGGTCATTGTCGGGGGCAAGGACGTTAAGATTCCGTATAAGTTTTTGGAGCCTGGCTCTGACGGTAACGGCGGCACCATCGTCGACTCTGGATCCACCTTCACGTTCATGGAGCGGCCCGTTTATAATTTGGTGGCCCAAGAGTTTGTGAAGCAGTTGGGGAAGAAGTATTCCAGGGCCGAGGACGTCGAGGCCCAATCTGGGTTGAGTCCCTGTTTTAATATTTCCGGCGTGAAGACCGTGAGTTTCCCCGAGTTGACTTTTCAGTTCAAAGGCGGCGCCAAAATGACGCTCCCGGTTGAAAATTATTTCTCGTTGGTCGGCGATTCCGAGGTTGTGTGTTTAACCGTTGTCTCCGACGGAGGTGCCGGTCCGGCGAGGACCACCGGTCCGGCCATCATTTTGGGGAACTATCAGCAGCAGAATTTCTACGTTGAATATGATTTGGAGAATGAGAGGTTCGGATTTGGTCCTCATAGTTGCAAAAAGAAAGCTTAG 1425 0.5319 MEEYITKKCSSGNCNEKKLFSLTLHSLSSNPDTITLPLSPLLTKPHSSSDPFHSLKLAASASLTRAHHLKHRNNDAPSVATTPAYPKSYGGYSIDLNFGTPPQTSPFVLDTGSSLVWFPCTSRYLCSHCNFPNIDPTKIPTFIPKNSSTAKLLGCRNPKCGYLFGPQVQSRCPRCKPESQNCSPTCPAYIIQYGLGSTAGFLLLDNLNFPGKIVPQFLVGCSILSIRQPSGIAGFGRGQESLPSQMNLKRFSYCLISHRFDDTQQNSDLLLQISSTGDTKTNGLSYTPFRSNPSTNNSAFKEYYYLTLRKVIVGGKDVKIPYKFLEPGSDGNGGTIVDSGSTFTFMERPVYNLVAQEFVKQLGKKYSRAEDVEAQSGLSPCFNISGVKTVSFPELTFQFKGGAKMTLPVENYFSLVGDSEVVCLTVVSDGGAGPARTTGPAIILGNYQQQNFYVEYDLENERFGFGPHSCKKKA 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03251 474 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 107 118 IPR001969 GO:0004190|GO:0006508
Pumo5g03251 474 CDD pepsin_A_like_plant 91 470 IPR034161 -
Pumo5g03251 474 PRINTS Pepsin (A1) aspartic protease family signature 442 457 IPR001461 GO:0004190|GO:0006508
Pumo5g03251 474 PRINTS Pepsin (A1) aspartic protease family signature 98 118 IPR001461 GO:0004190|GO:0006508
Pumo5g03251 474 PRINTS Pepsin (A1) aspartic protease family signature 335 346 IPR001461 GO:0004190|GO:0006508
Pumo5g03251 474 PANTHER OS07G0603500 PROTEIN-RELATED 40 471 - -
Pumo5g03251 474 Pfam Xylanase inhibitor C-terminal 304 466 IPR032799 -
Pumo5g03251 474 SUPERFAMILY Acid proteases 87 470 IPR021109 -
Pumo5g03251 474 FunFam Aspartic proteinase nepenthesin-2 66 269 - -
Pumo5g03251 474 FunFam Aspartyl protease family protein 275 473 - -
Pumo5g03251 474 ProSiteProfiles Peptidase family A1 domain profile. 92 466 IPR033121 -
Pumo5g03251 474 Gene3D Acid Proteases 271 474 IPR021109 -
Pumo5g03251 474 Pfam Xylanase inhibitor N-terminal 92 269 IPR032861 -
Pumo5g03251 474 Gene3D Acid Proteases 67 267 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03251 Pumo-Chr5 81534405 81538038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03251 59 472 Miscellaneous Gene Families AT1G77480 24.270 1.12e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03251 - - gmx:100805927 849.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03251 5 81534405 81538038 Pumo5g03251 5 81534405 81538038 ECH
Pumo5g03251 5 81534405 81538038 Pumo3g03040 3 55287977 55290050 PCT