Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03040 ATGCTTCCACCTCGCGTTTTTTTCTCCCTCCTCGCTTTCCTCTTCATCATATTCACCACCTTCACATCATCCACATCCACAGCCAACACCATCACCCTCCCTCTCTCTCCTTTATTCACCAACCACCACCCCTCTCCACACCCATTCCACACCCTCAAACTAGCAGTTTCCACATCCGTCACAAGAGCCCACCACCTCAAAAAAAACCACAAACCAAACAACAACCCTTCACTCAAAACCCCACTTCACACCAAAACCTACGGAGGCTACTCCATCGACCTCAAATTCGGAACCCCACCCCAAACCTTCCCCTTCGTCCTCGACACCGGAAGCAGCCTCGTCTGGCTCCCATGCTCCTCCCACTATTTATGTTCCAAATGCAACGCTTTTCCTAACAACACCCCCAAGTTCATCCCCAGAAACTCCTCCTCCTCAAAGTTCGTGGGCTGCACCAACCCCAAATGCGCGTGGGTCTTCGGCCCAAACGTTCAGTCCCACTGCTGCAAACAAAATATTAACGCCGCTAACTGCTCCCAAGCCTGCCCTGCCTACACCGTCCAGTACGGCCTGGGCTCCACCGCGGGCTTCCTCCTATCGGAGAATCTCAATTTTCCTGCCAAAACTGTCTCCGATTTTCTCCTCGGCTGCTCCGTCGTCTCCGTCTACCAGCCCTCCGGAATCGCCGGCTTCGGCCGCGGACCGGAGTCTCTGCCGGCGCAGATGAACCTCACGAGATTCTCTTACTGCTTACTCTCTCACCGATTCGACGACTCGCCGGAAACCAGCGACCTCGTCTTGGAAACCACCTCCTCCGGTAACGGAAAAACCAACGGCGTCAGCTACACGCCGTTTCTGAAAAACCCGTCCACGAAGAACCCTGCGTTCGGCGCGTACTATTACGTCTCTCTTAAGAGAATTATCGTTGGGGAGAAGCGCGTGAGGGTTCCGAAGAGGCTTTTGGAGCCCGACGTTAACGGTGACGGCGGGTTCATCGTTGACTCGGGGTCCACGTTTACATTTCTGGAGAGGCCTATTTACGATTTGGTGGCGCAGGAGTTTGCGAGGCAAGTGAACTACACGCGCGCGAGGGAGGTTGAGAAGCAATCCGGGCTGAGTCCGTGTTTCGTGGTGGCGGGTGCCGAAACGGCGTCGTTTCCGGAACTGAGTTTTGAGTTCAGGGGTGGCGCGAAGATGAAGCTGCCGGTGGCGAATTATTTTTCGCTGGTGGGGAAAGGTGACGTGGCGTGTTTGACGGTTGTGTCTGATGACGTGGCGGGTCCGGGCGTGGCGGCGGGACCCGCTGTGATATTGGGGAACTATCAGCAGCAGAATTTTTATGTTGAGTATGACTTGGCGAACGAGAGGTTTGGGTTTCGGAGTCAGAGTTGCCAAACGAGCGTTTAA 1404 0.5499 MLPPRVFFSLLAFLFIIFTTFTSSTSTANTITLPLSPLFTNHHPSPHPFHTLKLAVSTSVTRAHHLKKNHKPNNNPSLKTPLHTKTYGGYSIDLKFGTPPQTFPFVLDTGSSLVWLPCSSHYLCSKCNAFPNNTPKFIPRNSSSSKFVGCTNPKCAWVFGPNVQSHCCKQNINAANCSQACPAYTVQYGLGSTAGFLLSENLNFPAKTVSDFLLGCSVVSVYQPSGIAGFGRGPESLPAQMNLTRFSYCLLSHRFDDSPETSDLVLETTSSGNGKTNGVSYTPFLKNPSTKNPAFGAYYYVSLKRIIVGEKRVRVPKRLLEPDVNGDGGFIVDSGSTFTFLERPIYDLVAQEFARQVNYTRAREVEKQSGLSPCFVVAGAETASFPELSFEFRGGAKMKLPVANYFSLVGKGDVACLTVVSDDVAGPGVAAGPAVILGNYQQQNFYVEYDLANERFGFRSQSCQTSV 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03040 467 Pfam Xylanase inhibitor N-terminal 90 257 IPR032861 -
Pumo3g03040 467 Gene3D Acid Proteases 65 259 IPR021109 -
Pumo3g03040 467 Pfam Xylanase inhibitor C-terminal 299 459 IPR032799 -
Pumo3g03040 467 CDD pepsin_A_like_plant 89 463 IPR034161 -
Pumo3g03040 467 FunFam Aspartyl protease family protein 270 466 - -
Pumo3g03040 467 Gene3D Acid Proteases 267 467 IPR021109 -
Pumo3g03040 467 ProSiteProfiles Peptidase family A1 domain profile. 90 459 IPR033121 -
Pumo3g03040 467 PANTHER OS07G0603500 PROTEIN-RELATED 36 463 - -
Pumo3g03040 467 SUPERFAMILY Acid proteases 84 463 IPR021109 -
Pumo3g03040 467 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 105 116 IPR001969 GO:0004190|GO:0006508
Pumo3g03040 467 FunFam Aspartic proteinase nepenthesin-2 63 264 - -
Pumo3g03040 467 PRINTS Pepsin (A1) aspartic protease family signature 330 341 IPR001461 GO:0004190|GO:0006508
Pumo3g03040 467 PRINTS Pepsin (A1) aspartic protease family signature 96 116 IPR001461 GO:0004190|GO:0006508
Pumo3g03040 467 PRINTS Pepsin (A1) aspartic protease family signature 435 450 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03040 Pumo-Chr3 55287977 55290050 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03040 88 463 Miscellaneous Gene Families AT1G44130 24.069 4.02e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03040 - - gmx:100808552 731.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03040 3 55287977 55290050 Pumo3g03040 3 55287977 55290050 ECH
Pumo5g03251 5 81534405 81538038 Pumo3g03040 3 55287977 55290050 PCT