Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03141 ATGGAGGTTGGAGAAACAGAGAGAAAGAAGCTTCAAGAGCAGGTTCCTTGGGTCCCCACCACCCCTTTGAGGCCCATTCTTCCAAAACCAGGGCCGATCTGGACTCCTGGGGACGGAAACCACTTTTATTCTCATTCCAATGGGATAACTGCATGTTTTGAACCCTCAGCATGTGCAGAGATAAACAACTGGTCTCACCGCCGGTCAGAACACGTGGTTTTAGCACATGACAATACCAAAACTCGAGTACCAATATCCTTTGACGAAATTCCCGGTTCAAGTAACGGCATTGCTGAACTTTTAACTCAGGCAGATACTCCATCGGCATATTCAAATGCAACACAGGATGGGTTTTTTAACCAATTTGTTCCTGCGTTTAATTCACAGTTCAACCCGACCTATGCATTACTTAGCCATCAACATCATCTCTCTTGTGAGCAACCGTTTGTCAACACTGTCCATGACCAGTACCAAGATCTTCTTCAGGCAGGCACGTCATACTTTGCTTACTGTAGCAAGGCATTTCCCCAAATTGCCCCACATCCAGATAATGTCATTGCAGCAGAAACCAGACAAGATGCAGTGACACAAATGACTATAGAAGAAAGGAATCGAGAGGGAGAAGAGAAAAATGCCCCAGCAGCAAAGTGCAATAATCCACACAACATACTATATGACTCTGTTACAGAAGTTGCTGTTGTATCTACACACAAGGAGAATCACAACAACAAAAAGGAAATAAGCCATGATTTTGATCTGAATAAAACACCTCAACCAAAATCAAGAAGAAGAAAGCACCGCCCCAAGGTCATAAAAGAAGGCAAACCCAAAAGAACTAGCAAGCAGGTCACTGCAGAGTCTCTTCAGTCAAAAGAAAAGCCAACTGACAAGAGAAAGGCAAGAAGGAAAGGATTGAACACAACTTCTACTCCTCAAACAGAAGTGACAGGAGAATGGACTGAACCATTGATGCCTGAATCTGCCAAAAAGACATGTAGAAGGTCCTTGAATTTTGACATTGGAGAACAGCCAAGAGATGACAGTTCTGCATACAGAGAAACTATGCACTTTGCCAGAGACACCAGTGTGGTGATTGAAGAAACACTGGCCTTAAATAACTGTTTGTCACTACGAGGAGATGCGCAAACCCCCAGTACCTATCTTTCAAAATGCAATTCCCCTGTGACCAAGCCAAATCCTAACTACATAGAGATCGGCAGCTCAAGGGCTTGGATGATTGCTCACAATGGACATGAAAAGAGTGCAAATGACTCCAACAGCAAAGGATCAGGATTACATGTAGTTGGTTCCAAGAGAAAACAATCTGGTATTGAACAGGCAGATAATACAAGCATTAACCTGATCGGAGCACAATACAATGCTGTGCAGTCATATTGCCAAAAGTATTCGGTTCAATTTCCAAATGTTCAGAAGAAAAGGAGAAGTGAAAAGGGGAGAATTTCAAAGACATCCCATAAACCTTCCATGACTGCCACAAAAGATGTACAACTGGCAACATGCCCACAAGATGCTAGATCACATTTTTATGCATCAAGTCCCAACTGCTGGACTTCGTCTGAATATAATGCAGCTGGAGTCCCCGTAATTACAGCTACAGAAAGAGCTATTCATGATAAACCTCAATCATTTGAGTACAACTTTTCTTTAGGGCAGAGGAGGCCAACCAAAAGAAGATCAAGAGTCCCTACTAGAATTCATGATTGTTCTTTACTGACCATAACCAGAAACTGTGATACCAAACTAGCACATACTGCAAAACAAACATGCAGTTCTGGCAGACAAACATTTGGGGATGCAGAAAGACCACAGACATGCATTGATGCTTTAGTTGCAGAGATGCGAGCATCACTCACAAAAAAGAAACGAACTAGGAAGAGAAGTATTCCTGTCAGTTCAGCATATTCTTGCACAAATGGAATGCAACAGCACCGTAAAGTTGTGTTGGAAAATCATAGCATACCACCCTCACATAACGCATTAGATGTTGCTTGTGAAGAGATATGGAGAAACATACATACTGTGGACGCTTTAACAGAGCAATTTAGACGCCTAAACATCTACAGAGAAGCCAAAGAGATTGTGTTACATGGGCAGAATATGCTTGTCCCTTATAACCAGCAAAATCAGAAGAACAAAGGCCTTGTCCATGAATATGGCACCATCATTCCATTCGAGGGCCCATTTGATCCCATAAGAAAACAGCGCCCACGACCTAAAGTTGACCTTGATGAGGAGACTAATAGAGTGTGGAAGCTTCTAATGTTGGATATAAACAGTCATGGCATCGATGGAACAGATGAAGACAAGGCCAAATGGTGGGAAGAAGAACGAAATGTGTTCTGTGGACGAGCAGACTCATTTATTGCACGGATGCATCTTGTACAAGGAGACAGACGCTTTTCTCGATGGAAGGGATCGGTTGTGGATTCTGTGATTGGAGTTTTCCTCACTCAAAATGTCTCGGACCATCTTTCCAGTTCTGCATTCATGTCCCTTGCTGCTCGATTTCCTCTAAGGTCAAGCAGTAACTACAAAACATGCCCTGAGGAATGCACAAGTTTGGTAGTCAATGAACCACAAGTGTGCATTGTGGAGCCAGAAGAAAATGAAAAACTGGATGAGAAAATATTGGATCAATCTATTTGTGAATTGAATTCTATGATAACAGACATCATCGAGCATTCTGAAGAAAGAGAAGCTGTTGACAGCAACAGTTCCTACAGAACTACCGGCAGCTTAATTGGTGTAACAGATGAATCAAACAGCAAATTGCTGGAATCAGCTCAAAGACATAACAGTGAACATAGTCCAGTGGAGAGTGGAGCAATTAGTGCTGTGACTGGGGAAGGGCAAGAAAATTTATGTCATGGGAGTGTTAGGAAAGAGTTAAATGACATATTTTCATCCCAATGCTCTGCTGTTACATCTCAAATATCAGGAGATTTTTCAATTGATCAAAATCCTGAAAAGATAGGATCATTCTCAGATAGCAACTCAGAAATAGAAGACCTGTCAAGCGCTGCCAAGTACAATAGTCATTATAATAGAATTTCTTTCAGTGAGCTTTTAGAAATGGCAAGTTCAACCATGTTGCATGAAGTTAACAGTCAAAAAAGCAAATCAACTGAGAACTTAGGAGATACATGTGATCAGTCTATAGACATGAAGCATGACAACCTGGCTGAAAACTTGGAAAAATCAGATGTTACTCAAGGCTCCGTGGAAGCACCCATCACCAATGGATATACTTTGAAAATAACCCCGAACTCAGGAGTACTTGAGGTTAATTGTTATGATCCTCTCAAAATAGAAGTCCCATCAAGTGGCTCCTCGAAGGGTAAAGATGAGAATGACAATAGATCTAGTTTTCCAACAGAGACTGACTGCCAAGCTGCAATTGTCCATTCTCAAGGACAAACTCAAGATCCAATGCAGAAAGCAAGGGAACTAGATTTTGGTAGGAATGAAAACAGTAAGATAGATTCTGCCCCTGTAAAATTAAGGAGCAGGGAGCGTGGAAAAGAGAAAAAGAATAACTTTGATTGGGATAGTTTAAGAATACAAGCAGAAGCTAAGGCAGGGAAAAGAGAAAAGACAGAGAACACCATGGACTCCTTGGACTGGGATGCTGTAAGATGTGCAGATGTCAATGAAATTGCCGATGCAATCAAAGAAAGGGGCATGAACAACATGCTTGCTGAACGTATTAAGAATTTCCTGAATCTATTGGTTGACAAGCATGGGGCCATCGATCTCGAGTGGCTGAGAGATGTTCCACCTGACCAAGCAAAAGAATACTTGCTCAGCATAAGGGGATTGGGATTGAAAAGTGTGGAGTGCGTACGACTCTTAACACTACACCATCTTGCTTTTCCGGTGGACACAAATGTTGGACGTATAGCGGTACGATTGGGATGGGTACCTCTCCAGCCACTGCCAGAGTCACTACAGTTGCATCTTCTAGAATTGTACCCAGTGTTGGAGTCCATACAAAAATATCTCTGGCCCCGGCTCTGCAAGCTAGATCAAAGAACATTGTATGAGCTGCATTACCAGCTGATTACATTCGGAAAGGTCTTCTGTACTAAAAGCAAGCCAAATTGCAATGCATGCCCAATGAGAGGGGAATGCAGACACTTTGCAAGTGCTTTTGCAAGTGCAAGGCTTGCCCTGCCAGGACCAGAGCAGAAGAGTATAGTTATCACAACTGGAAACAATGCAACTGAGCAGAACCCATCACTAGTCATCAATCAGCTGCCCTTGCTTCTCCCTGAAAATACAAACCAAGCAGAACTTCAACAAACAGAAGTGATCAGGCAACTAGAAGCAAAATCTGAAATCAATATCAGCCAACCTATTATTGAAGAGCCAGCAACACCAGAGCCAGAATGCTCCCAAGTATCAGAAAATGATATAGAGGATACCTTCAACGAGGAATCATGCGAAATTCCCACCATCAAACTAGACATAGAAGAGTTCACTTTGAACTTACAAAACTATATGCAAGAAAACATGGAACTTCAAGAAGGTGAAATGTCAAAGGCCTTGGTTGCTCTACATCCAGGTGCTGCATGCATTCCTACACCCAAGCTGAAGAATGTGAGCCGGTTGCGAACAGAGCATTATGTTTATGAACTCCCTGATTCACATCCTCTTCTGAATGGGTGGGACAGGCGAGAACCTGATGATCCAGGCAAATACCTTCTAGCTATATGGACTCCAGGGGAGACAGCAGATTCTATACAACCACCAGAAAGAAAATGCAGCTTTCAGGACTGTGGCCAGCTCTGTAATGAGAAGGAATGTTTTTCATGCAACAGTTTCCGCGAAGCAAATTCACAAATAGTTCGAGGGACACTCCTGATACCATGCCGAACAGCTATGAGAGGGAGCTTTCCGCTAAATGGCACCTATTTTCAAGTCAATGAGGTTTTCGCGGACAATGACTCAAGTCTTAACCCAATTAGTGTTCCCCGAAGTTGGATCTGGAACCTTGATAGGCGAACAGTCTATTTTGGAACCTCCATACCATCCATATTCAAAGGTAAACTCTTAAAAAGTAGTGAAAAATGTTTTGCAGGATATGTCTGCGTGCGAGGATTTGACCGGGAAAAGCGATCACCCCGTCCTCTGTTGGCTAGACTACACTTCCCGGTTAGCAGGTTGCCTAAGAACAGGGAGAAGACCAAAAAAGAGTCCACATCGGCAAACTCACAAGGATTAAATTTTAAACAAAATCCAGAACAGCCAGAATTGCTTTCCAACGTACGGGAGACCGGTGGAGCCTGA 5310 0.4271 MEVGETERKKLQEQVPWVPTTPLRPILPKPGPIWTPGDGNHFYSHSNGITACFEPSACAEINNWSHRRSEHVVLAHDNTKTRVPISFDEIPGSSNGIAELLTQADTPSAYSNATQDGFFNQFVPAFNSQFNPTYALLSHQHHLSCEQPFVNTVHDQYQDLLQAGTSYFAYCSKAFPQIAPHPDNVIAAETRQDAVTQMTIEERNREGEEKNAPAAKCNNPHNILYDSVTEVAVVSTHKENHNNKKEISHDFDLNKTPQPKSRRRKHRPKVIKEGKPKRTSKQVTAESLQSKEKPTDKRKARRKGLNTTSTPQTEVTGEWTEPLMPESAKKTCRRSLNFDIGEQPRDDSSAYRETMHFARDTSVVIEETLALNNCLSLRGDAQTPSTYLSKCNSPVTKPNPNYIEIGSSRAWMIAHNGHEKSANDSNSKGSGLHVVGSKRKQSGIEQADNTSINLIGAQYNAVQSYCQKYSVQFPNVQKKRRSEKGRISKTSHKPSMTATKDVQLATCPQDARSHFYASSPNCWTSSEYNAAGVPVITATERAIHDKPQSFEYNFSLGQRRPTKRRSRVPTRIHDCSLLTITRNCDTKLAHTAKQTCSSGRQTFGDAERPQTCIDALVAEMRASLTKKKRTRKRSIPVSSAYSCTNGMQQHRKVVLENHSIPPSHNALDVACEEIWRNIHTVDALTEQFRRLNIYREAKEIVLHGQNMLVPYNQQNQKNKGLVHEYGTIIPFEGPFDPIRKQRPRPKVDLDEETNRVWKLLMLDINSHGIDGTDEDKAKWWEEERNVFCGRADSFIARMHLVQGDRRFSRWKGSVVDSVIGVFLTQNVSDHLSSSAFMSLAARFPLRSSSNYKTCPEECTSLVVNEPQVCIVEPEENEKLDEKILDQSICELNSMITDIIEHSEEREAVDSNSSYRTTGSLIGVTDESNSKLLESAQRHNSEHSPVESGAISAVTGEGQENLCHGSVRKELNDIFSSQCSAVTSQISGDFSIDQNPEKIGSFSDSNSEIEDLSSAAKYNSHYNRISFSELLEMASSTMLHEVNSQKSKSTENLGDTCDQSIDMKHDNLAENLEKSDVTQGSVEAPITNGYTLKITPNSGVLEVNCYDPLKIEVPSSGSSKGKDENDNRSSFPTETDCQAAIVHSQGQTQDPMQKARELDFGRNENSKIDSAPVKLRSRERGKEKKNNFDWDSLRIQAEAKAGKREKTENTMDSLDWDAVRCADVNEIADAIKERGMNNMLAERIKNFLNLLVDKHGAIDLEWLRDVPPDQAKEYLLSIRGLGLKSVECVRLLTLHHLAFPVDTNVGRIAVRLGWVPLQPLPESLQLHLLELYPVLESIQKYLWPRLCKLDQRTLYELHYQLITFGKVFCTKSKPNCNACPMRGECRHFASAFASARLALPGPEQKSIVITTGNNATEQNPSLVINQLPLLLPENTNQAELQQTEVIRQLEAKSEINISQPIIEEPATPEPECSQVSENDIEDTFNEESCEIPTIKLDIEEFTLNLQNYMQENMELQEGEMSKALVALHPGAACIPTPKLKNVSRLRTEHYVYELPDSHPLLNGWDRREPDDPGKYLLAIWTPGETADSIQPPERKCSFQDCGQLCNEKECFSCNSFREANSQIVRGTLLIPCRTAMRGSFPLNGTYFQVNEVFADNDSSLNPISVPRSWIWNLDRRTVYFGTSIPSIFKGKLLKSSEKCFAGYVCVRGFDREKRSPRPLLARLHFPVSRLPKNREKTKKESTSANSQGLNFKQNPEQPELLSNVRETGGA 1769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03141 1769 CDD ENDO3c 1214 1332 IPR003265 GO:0006284
Pumo5g03141 1769 MobiDBLite consensus disorder prediction 1729 1769 - -
Pumo5g03141 1769 FunFam DNA glycosylase/AP lyase ROS1 1288 1396 - -
Pumo5g03141 1769 Coils Coil 1497 1517 - -
Pumo5g03141 1769 Pfam Permuted single zf-CXXC unit 1591 1622 IPR028924 -
Pumo5g03141 1769 SUPERFAMILY DNA-glycosylase 789 1389 IPR011257 GO:0003824|GO:0006281
Pumo5g03141 1769 Pfam RRM in Demeter 1625 1724 IPR028925 -
Pumo5g03141 1769 SMART endo3end 1200 1366 IPR003265 GO:0006284
Pumo5g03141 1769 MobiDBLite consensus disorder prediction 240 258 - -
Pumo5g03141 1769 Gene3D Hypothetical protein; domain 2 1193 1288 - -
Pumo5g03141 1769 MobiDBLite consensus disorder prediction 1111 1181 - -
Pumo5g03141 1769 MobiDBLite consensus disorder prediction 259 274 - -
Pumo5g03141 1769 MobiDBLite consensus disorder prediction 1741 1760 - -
Pumo5g03141 1769 PANTHER TRANSCRIPTIONAL ACTIVATOR DEMETER 171 1738 IPR044811 GO:0019104|GO:0035514|GO:0080111
Pumo5g03141 1769 MobiDBLite consensus disorder prediction 1154 1181 - -
Pumo5g03141 1769 Gene3D - 1289 1404 IPR023170 -
Pumo5g03141 1769 MobiDBLite consensus disorder prediction 419 443 - -
Pumo5g03141 1769 MobiDBLite consensus disorder prediction 1130 1151 - -
Pumo5g03141 1769 MobiDBLite consensus disorder prediction 476 501 - -
Pumo5g03141 1769 MobiDBLite consensus disorder prediction 240 316 - -
Pumo5g03141 1769 SMART ccc3 1367 1387 IPR003651 GO:0051539
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03141 Pumo-Chr5 80194309 80204487 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03141 - - gmx:100787368 3081.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03141 5 80194309 80204487 Pumo5g03141 5 80194309 80204487 ECH
Pumo5g03141 5 80194309 80204487 Pumo3g03146 3 57886625 57899010 PCT