Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03115 ATGCGGGGTCGTGTTCCCCTGTTGCTCGCGTTAGTCACCGTGGCGGCGGCCGCGACGGTGGTATGCGGCGGTTTTGCAGGTACTTTTCTTGCTCTGGAACGGGCCATTCCTCTGAACCAGCGAGTGGAGCTGGAGGCGCTGAGAGCTCGCGACAGAGCACGCCACGGTCGAATCTTGCAAGGTGTCGTCGACTTCTCCGTCCAAGGAACCTCCGATCCTTACTTCGTCGGGTTGTATTTCACGAAAGTGAAGTTGGGATCTCCTGCGAAAGAGTTTTACGTTCAGATTGATACTGGAAGTGACATCTTGTGGCTAAATTGCATTACTTGCAGTAATTGCCCGAAATCTAGTGGGTTGGGGATTGAGCTCAATTTATTTGACACGGCCGGTTCATCCACTGCTGCACTTGTTTCCTGTGCGGACCCGATATGTTCGTATGCGGTTCAAACTGCGACAAGTGAATGCTCTTCTCAGGCTAATCAGTGCAGTTACACTTTTCAGTATGGAGATGGAAGTGGGACAACTGGTTATTATGTTTCTGATACAATGTATTTTGACACGGTCCTGGGACAGTCTGTGTTTACTAACTCTTCATCGACCATCATTTTTGGGTGTAGCACCTACCAGTCTGGGGATTTGACCAAGACAGATAAAGCAGTTGATGGAATTTTTGGGTTTGGCCCTGGTGCCCTATCTGTTATATCACAATTGTCATCACGGGGTGTAACACCCAAAGTCTTCTCTCATTGCTTAAAAGGAGGAGAGAATGGAGGAGGCGTGCTAGTTCTTGGTGAAATTTTGGAGCCAAATATTGTTTATAGTCCACTTGTCCCATCACAGCCTCATTACAACTTAAATCTTCAGAGCATTGCTGTCAATGGACAACTTCTCCCAATTGATTCAAATGTATTTGCAACAGCTAACAATCGAGGAACGATAGTTGACTCTGGCACAACATTGGCATACCTTGTTCAAGAAGCTTACAATCCTTTTGTCGGTGCTATAACTGCAGCTGTGTCACAGTTTTCGAAACCCATTATTTCAAAAGGAAACCAGTGTTATCTGGTATCAAACAGTGTAGGTGATATATTTCCTCAAGTCAGTTTAAACTTCATGGGCGGAGCATCTATGGTTTTAAATCCAGAACATTACCTCATGCATTATGGTTTCCTTGATGGTGCTGCAATGTGGTGCATTGGCTTCCAAAAAGTGGAGCAGGGATTCACAATTTTAGGAGATCTTGTCCTAAAAGATAAGATATTTGTATATGACTTAGCTAACCAACGAATTGGATGGGCCAATTATGATTGTTCCTTGGCTGTAAACGTGTCTCTGGCTACGAGCAAGAGCAAGGATGCATACATCAACAATTCAGGACAGATGAGTGTGAGCTGCTCCAACATAGGCGCTTTCTCCAAGTTGCTAGCTGTGGGCATTGCTGCTTTCCTTGTGCACATAATAGTTTTCATGGAGTCTCAATTTTTGTAA 1488 0.4509 MRGRVPLLLALVTVAAAATVVCGGFAGTFLALERAIPLNQRVELEALRARDRARHGRILQGVVDFSVQGTSDPYFVGLYFTKVKLGSPAKEFYVQIDTGSDILWLNCITCSNCPKSSGLGIELNLFDTAGSSTAALVSCADPICSYAVQTATSECSSQANQCSYTFQYGDGSGTTGYYVSDTMYFDTVLGQSVFTNSSSTIIFGCSTYQSGDLTKTDKAVDGIFGFGPGALSVISQLSSRGVTPKVFSHCLKGGENGGGVLVLGEILEPNIVYSPLVPSQPHYNLNLQSIAVNGQLLPIDSNVFATANNRGTIVDSGTTLAYLVQEAYNPFVGAITAAVSQFSKPIISKGNQCYLVSNSVGDIFPQVSLNFMGGASMVLNPEHYLMHYGFLDGAAMWCIGFQKVEQGFTILGDLVLKDKIFVYDLANQRIGWANYDCSLAVNVSLATSKSKDAYINNSGQMSVSCSNIGAFSKLLAVGIAAFLVHIIVFMESQFL 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03115 495 Gene3D Acid Proteases 62 265 IPR021109 -
Pumo5g03115 495 PRINTS Pepsin (A1) aspartic protease family signature 409 424 IPR001461 GO:0004190|GO:0006508
Pumo5g03115 495 PRINTS Pepsin (A1) aspartic protease family signature 85 105 IPR001461 GO:0004190|GO:0006508
Pumo5g03115 495 PRINTS Pepsin (A1) aspartic protease family signature 312 323 IPR001461 GO:0004190|GO:0006508
Pumo5g03115 495 CDD pepsin_A_like_plant 79 437 IPR034161 -
Pumo5g03115 495 FunFam Aspartic proteinase-like protein 2 62 265 - -
Pumo5g03115 495 Gene3D Acid Proteases 266 443 IPR021109 -
Pumo5g03115 495 PANTHER ASPARTYL PROTEASES 25 431 IPR001461 GO:0004190|GO:0006508
Pumo5g03115 495 Pfam Xylanase inhibitor C-terminal 282 433 IPR032799 -
Pumo5g03115 495 SUPERFAMILY Acid proteases 74 439 IPR021109 -
Pumo5g03115 495 ProSiteProfiles Peptidase family A1 domain profile. 79 433 IPR033121 -
Pumo5g03115 495 FunFam Aspartic proteinase-like protein 2 266 444 - -
Pumo5g03115 495 Pfam Xylanase inhibitor N-terminal 79 264 IPR032861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03115 Pumo-Chr5 79927836 79933735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03115 63 438 Miscellaneous Gene Families AT1G44130 26.884 3.12e-36 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03115 - - gmx:100804147 890.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03115 5 79927836 79933735 Pumo5g03115 5 79927836 79933735 ECH
Pumo5g03115 5 79927836 79933735 Pumo3g03177 3 58383858 58388570 PCT