Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo3g03177 ATGCGGTGTTGCATTCCGACGTTGTTGGCCGTGACCACCGTGCTGGTGTCGGCGGTGCACGGCGTTTTCCTCCCTCTGGAGAGGAGCATTCCTCCGAGCCACCGCGTGGAGGTGGCGGCGCTGAGGGCCCGCGACAGAGCCCGCCACGCCCGAATATTGCGCGACGTGGCCGGCGGCGTTGTCGACTTCACCGTCCAAGGCACCTCCGATCCAAACTCCGTTGGGTTGTATTATACCAAAGTGAAGATGGGAACTCCTCCTAAAGAATTTAACGTTCAGATTGATACGGGGAGTGATATATTGTGGATCAATTGCAATACTTGCAGTAATTGTCCTCAGTCTAGTCAACTAGGGATTGAGCTTAATTTCTTTGACACGGTTGGGTCGTCCACAGCTGCGTTGATTCCCTGCTCGGACCCGATATGCACTACTGGGGTTCAGGGTGCTGCTGCTGAGTGCTCCTCGAGGGTTAATCAGTGCAGCTACACCTTTCAGTATGGAGATGGGAGTGGGACATCAGGTTATTATGTTTCGGATGCAATGTATTTTAGCTTGATCATGGGACAGCCTCCGGAGATTAACTCTTCAGCTACCATTGTTTTTGGGTGTAGCATCAGTCAGTCTGGAGATTTGACTAAGTCAGATAAAGCAGTTGATGGAATTTTTGGGTTTGGCCCTGGTCCTCTATCTGTTGTATCACAATTGTCATCTCGAGGAATAACACCCAAAGTTTTCTCTCATTGCTTAAAGGGAGATGGCAATGGAGGAGGAATTCTAGTTCTTGGTGAGATTTTGGAGCCAAGTATTGTTTATAGCCCACTTGTCCCATCACAGCCGCATTACAACTTGAATCTTCAGAGTATTGCTGTCAGTGGGCAACTTCTACCAATTAATCCAGCTGTATTTGCAATATCTAACAACCAAGGAGGGACTATAGTTGACTGTGGTACAACATTGACATATCTTATTCAAGAAGCTTATGATCCTCTTGTCACTGCTATAAATACTGCTGTGTCACAATCTGCTAGGCAAACAAATTCCAAGTGTTATCTGGTCTCAACCAGTATAGGTGACATTTTTCCTTCGGTCAGTTTAAACTTTGAGGGTGGAGCGTCAATGGTTTTAAAACCAGAGCAGTACCTTATGCATAATGGTTACCTTGATGGTGCTGAAGTGTGGTGCTTCGGTTTCCAGAAAGTGCAGGAGGGATCAACAATTTTAGGAGATCTTGTCCTAAAAGATAAGATAGTTGTGTATGACTTAGCTCATCAACGAATTGGATGGGCTAACTATGACTGTTCTCTGTCTGTAAATGTTTCGGTGACTACAAGCAAGGATGAGTACATCAATGCGGGGCAGCCCCATGTCAGCAGCTCCGAAATGCGCATTCTTTCTAAGTTACTACCTGTAAGCATTGTGGCTCTCTCTATTATGTACATAATGTTGGTATGA 1452 0.4628 MRCCIPTLLAVTTVLVSAVHGVFLPLERSIPPSHRVEVAALRARDRARHARILRDVAGGVVDFTVQGTSDPNSVGLYYTKVKMGTPPKEFNVQIDTGSDILWINCNTCSNCPQSSQLGIELNFFDTVGSSTAALIPCSDPICTTGVQGAAAECSSRVNQCSYTFQYGDGSGTSGYYVSDAMYFSLIMGQPPEINSSATIVFGCSISQSGDLTKSDKAVDGIFGFGPGPLSVVSQLSSRGITPKVFSHCLKGDGNGGGILVLGEILEPSIVYSPLVPSQPHYNLNLQSIAVSGQLLPINPAVFAISNNQGGTIVDCGTTLTYLIQEAYDPLVTAINTAVSQSARQTNSKCYLVSTSIGDIFPSVSLNFEGGASMVLKPEQYLMHNGYLDGAEVWCFGFQKVQEGSTILGDLVLKDKIVVYDLAHQRIGWANYDCSLSVNVSVTTSKDEYINAGQPHVSSSEMRILSKLLPVSIVALSIMYIMLV 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo3g03177 483 PRINTS Pepsin (A1) aspartic protease family signature 83 103 IPR001461 GO:0004190|GO:0006508
Pumo3g03177 483 PRINTS Pepsin (A1) aspartic protease family signature 405 420 IPR001461 GO:0004190|GO:0006508
Pumo3g03177 483 PRINTS Pepsin (A1) aspartic protease family signature 311 322 IPR001461 GO:0004190|GO:0006508
Pumo3g03177 483 Pfam Xylanase inhibitor C-terminal 280 429 IPR032799 -
Pumo3g03177 483 Pfam Xylanase inhibitor N-terminal 77 262 IPR032861 -
Pumo3g03177 483 Gene3D Acid Proteases 264 440 IPR021109 -
Pumo3g03177 483 ProSiteProfiles Peptidase family A1 domain profile. 77 429 IPR033121 -
Pumo3g03177 483 CDD pepsin_A_like_plant 77 433 IPR034161 -
Pumo3g03177 483 Gene3D Acid Proteases 61 263 IPR021109 -
Pumo3g03177 483 FunFam Aspartic proteinase-like protein 2 264 440 - -
Pumo3g03177 483 FunFam Aspartic proteinase-like protein 2 60 263 - -
Pumo3g03177 483 SUPERFAMILY Acid proteases 74 436 IPR021109 -
Pumo3g03177 483 PANTHER ASPARTYL PROTEASES 12 427 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo3g03177 Pumo-Chr3 58383858 58388570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo3g03177 61 434 Miscellaneous Gene Families AT1G44130 28.607 2.14e-42 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo3g03177 - - gmx:100820394 864.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo3g03177 3 58383858 58388570 Pumo3g03177 3 58383858 58388570 ECH
Pumo5g03115 5 79927836 79933735 Pumo3g03177 3 58383858 58388570 PCT