Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02987 ATGATGAAGAAACAATTGACAGGTATACGGGGTGATTCTCCGCTGCAATCGGCAATCCGAGCTGGAAATTTAGAATTGGTTCTTGAAATCATCTCTCAGAGTTCAGAGGAAGAATTAAAGGAGTTGCTTGCAAAGAAAAACAACTCTTGTGAAACTGCCTTATATGTTGCTGCTGAAATTGGTCATCTTGATATATTGAAGGAATTGATTAGATACCATGATATTGGGTTGGCCAGCCTCAAAGCTAGAAATGGATTTGATGCATTCCACATTGCTGCTAAAAATGGACACTTGGAGATATTGAAGGTCCTCATGGAGGCCATTCCTGAAATTTCAATGACTGTTGATCTGTCAAACACTACTGCATTGCATACAGCTGCAGCACAAGGACACATTGAGATAGTAAACTTTCTCTTGGAAAAAGGTAGCAGCCTGGTAACTATTGCAAGAAGCAATGGGAAAACTGTGTTGCATTCTGCTGCAAGAAATGGCTACATGGAGGTCGTCAAGGCCATTCTGAGCAAAGAACCTGAAATTGCAATGAGAATTGACAAGAAGGGGCAGACAGCACTCCATATGGCAGTTAAAGGACAGAATCTTGAGTTAGTGGATGAGCTCTTGAAACTGAATCCATCTTTGGCTAATATGGTGGATGCCAAGGGAAACACTGCACTGCATATAGCAACCCGGAAGGGTCGTCTACAGGTTGTTCAGAAGCTACTAGATTGCAGAGAAATAGACACAGATGTTATTAACAAATCTGGAGAAACTGCTTTAGATACTGCAGAGAAAAATGGTCGCTTGGAAATTGCCAACTTTCTGCAACATCGTGGAGCTCAAAGTGCCAAGTCCATCAAGTCACCTACTACCAACACGGCCCTTGAACTCAAACGAACAGTGAGTGACATAAAAAGTGGGGTTCATAACCAGCTGGAACACACAATTAAAACACAAAGACGTATGCAAGGTATAGCGAAGCGAATTAACAAAATGCACACTGAGGGGCTTAACAATGCGATCAACTCCAACACTGTTGTTGCTGTCCTAATTGCAACAGTTGCTTTTGCTGCCATATTTAATGTCCCGGGCCAGTATCCTGAGAAACCAAATGAACTCTCTCCTGGAATGTCTCCTGGGGAAGCATATATTGCTTCGGATATAGGATTCAAGATATTCATAATCTTCGATTCTACTGCCCTCTTCATATCATTGGCTGTTGTGATTGTCCAAACATCAGTGGTTGTTATTGAGAGGAAAGCAAAGAGACAAATGATGGCAGTTATAAATAAGTTGATGTGGGTTGCATGTGTGCTAATTTCTGTGGCATTTATTGCAATGTCATACATAATTGTTGGGGATCATAAAGAGTTGGCTATAGCAGCCACAGCTCTAGGAACAGTGATTATGGCAGCTACTTTAGGAACACTCTGTTATTGGGTGATTGCTCACCGCCTTGAGGCCTCAAGATTGCGAAGTCTTAGGACAACAATGAGCAGTAGGCAGTCAATGTCTATGTCAATGATGTCAGGATCGGAGAATGAGTACAAGACAGTGTACGCAATATAA 1566 0.4189 MMKKQLTGIRGDSPLQSAIRAGNLELVLEIISQSSEEELKELLAKKNNSCETALYVAAEIGHLDILKELIRYHDIGLASLKARNGFDAFHIAAKNGHLEILKVLMEAIPEISMTVDLSNTTALHTAAAQGHIEIVNFLLEKGSSLVTIARSNGKTVLHSAARNGYMEVVKAILSKEPEIAMRIDKKGQTALHMAVKGQNLELVDELLKLNPSLANMVDAKGNTALHIATRKGRLQVVQKLLDCREIDTDVINKSGETALDTAEKNGRLEIANFLQHRGAQSAKSIKSPTTNTALELKRTVSDIKSGVHNQLEHTIKTQRRMQGIAKRINKMHTEGLNNAINSNTVVAVLIATVAFAAIFNVPGQYPEKPNELSPGMSPGEAYIASDIGFKIFIIFDSTALFISLAVVIVQTSVVVIERKAKRQMMAVINKLMWVACVLISVAFIAMSYIIVGDHKELAIAATALGTVIMAATLGTLCYWVIAHRLEASRLRSLRTTMSSRQSMSMSMMSGSENEYKTVYAI 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02987 521 ProSiteProfiles Ankyrin repeat region circular profile. 220 242 - -
Pumo5g02987 521 ProSiteProfiles Ankyrin repeat region circular profile. 84 106 - -
Pumo5g02987 521 ProSiteProfiles Ankyrin repeat profile. 118 150 IPR002110 GO:0005515
Pumo5g02987 521 ProSiteProfiles Ankyrin repeat region circular profile. 186 208 - -
Pumo5g02987 521 SUPERFAMILY Ankyrin repeat 14 279 IPR036770 -
Pumo5g02987 521 ProSiteProfiles Ankyrin repeat region circular profile. 152 179 - -
Pumo5g02987 521 ProSiteProfiles Ankyrin repeat profile. 152 184 IPR002110 GO:0005515
Pumo5g02987 521 Pfam Ankyrin repeats (many copies) 12 70 IPR002110 GO:0005515
Pumo5g02987 521 ProSiteProfiles Ankyrin repeat profile. 84 116 IPR002110 GO:0005515
Pumo5g02987 521 ProSiteProfiles Ankyrin repeat profile. 220 242 IPR002110 GO:0005515
Pumo5g02987 521 Gene3D - 1 147 IPR036770 -
Pumo5g02987 521 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 10 505 - -
Pumo5g02987 521 SMART ANK_2a 152 181 IPR002110 GO:0005515
Pumo5g02987 521 SMART ANK_2a 118 148 IPR002110 GO:0005515
Pumo5g02987 521 SMART ANK_2a 84 113 IPR002110 GO:0005515
Pumo5g02987 521 SMART ANK_2a 186 215 IPR002110 GO:0005515
Pumo5g02987 521 SMART ANK_2a 10 41 IPR002110 GO:0005515
Pumo5g02987 521 SMART ANK_2a 254 283 IPR002110 GO:0005515
Pumo5g02987 521 SMART ANK_2a 220 250 IPR002110 GO:0005515
Pumo5g02987 521 SMART ANK_2a 49 77 IPR002110 GO:0005515
Pumo5g02987 521 Pfam Ankyrin repeats (3 copies) 217 279 IPR002110 GO:0005515
Pumo5g02987 521 Pfam Ankyrin repeats (3 copies) 89 179 IPR002110 GO:0005515
Pumo5g02987 521 Pfam Domain of unknown function 334 449 IPR026961 -
Pumo5g02987 521 Gene3D - 148 335 IPR036770 -
Pumo5g02987 521 ProSiteProfiles Ankyrin repeat region circular profile. 118 145 - -
Pumo5g02987 521 ProSiteProfiles Ankyrin repeat profile. 186 208 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02987 Pumo-Chr5 77810051 77812665 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02987 2 521 Miscellaneous Gene Families AT1G07710 63.688 0.0 617
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02987 - - gmx:100802370 892.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02987 5 77810051 77812665 Pumo3g00101 3 1349049 1352855 ECH
Pumo5g02987 5 77810051 77812665 Pumo5g02987 5 77810051 77812665 ECH